Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq574 116 9e-21 seq598 98.7 2e-15 seq1010 89.7 1e-12 >seq574 Length=30825 Score = 116 bits (128), Expect = 9e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||| || ||||||||||| ||| | |||| |||||| Sbjct 26584 AGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCT 26643 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| || | ||||||||| | | || || ||||| | Sbjct 26644 TCGAGCTGCTTT--CCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTAT 26701 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || ||||| | || | | |||| ||| ||| || ||||| || || | Sbjct 26702 CCTGAATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTG 26761 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 | || |||||||| || || ||||||| |||||| || || Sbjct 26762 TCTTCCCCGTGAGGGTTTTGACGAAGATCTGCATCTTGCC 26801 >seq598 Length=71582 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| | || |||||||| || || ||||| |||| | ||||| ||||| Sbjct 1161 AGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATCC 1102 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||| || |||| | || || ||||| || Sbjct 1101 TCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 1042 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || ||| | || | | |||| || || ||||| ||||| || || Sbjct 1041 TGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTC 982 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||| | ||||| Sbjct 981 TTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || | ||| |||||||| ||||||||||| || | | || | ||||| Sbjct 1389 AGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCC 1330 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| || || | ||||||||| | | ||| || ||||| || Sbjct 1329 TCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1270 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||| | || | | |||| || || ||||| | ||||| || Sbjct 1269 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGACTTCCAACGTAATCGTC 1210 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| ||||| Sbjct 1209 TTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| || || ||||| |||| | || || ||||| Sbjct 933 AGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGACAGGGTCCTGCCATCC 874 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | ||| ||||| ||||| |||| | || ||||| | | || || ||||| || Sbjct 873 TCCAACTGTTTTCCGGCAAAGATCAAGCGT-TGTTGGTCGGGAGGAATACCCTCCTTGTC 815 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | || || |||||| |||||||| || || Sbjct 814 CTGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTACCTCAAGAGTGATCGT 755 Query 152072 TTTGCCCGTGA 152082 ||||| |||| Sbjct 754 CTTGCCAGTGA 744 >seq1010 Length=27177 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 ||||||||||||||||||| | |||| || || || || || ||||||||||| Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | || || |||| | || || ||||| || ||||| || ||||||| | || Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || || || || || || |||||||| || ||||| ||||| Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAA 25695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153803340888451