Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq598 187 5e-42 seq574 149 1e-30 seq1010 147 5e-30 >seq598 Length=71582 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||| ||||| || ||||| |||||| ||||| || || |||||||| | Sbjct 1177 ACCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGA 1118 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || || |||||||||| || ||||| || || Sbjct 1117 CAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGG 1058 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||||| || || ||||||| ||||| || | |||||| Sbjct 1057 AATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGAC 998 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 997 TTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| |||||| || ||||||| ||| ||||| || || |||||||| | Sbjct 949 ACCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGA 890 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||||||| | ||||| |||||||||||||| ||||||||||| || Sbjct 889 CAGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGG 830 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || || |||||||||| || || | || || Sbjct 829 AATACCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTAC 770 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||||||||| || || Sbjct 769 CTCAAGAGTGATCGTCTTGCCAGT 746 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || || || || || ||| ||||| |||||||||||||||| Sbjct 1405 ACCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGA 1346 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| |||||||| || || || |||| || || |||||| || Sbjct 1345 GAGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGG 1286 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | || ||| | ||||| ||||| || | |||||| Sbjct 1285 GATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGAC 1226 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || |||||||| || || || ||||| ||||| || ||||| Sbjct 1225 TTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || || || || || ||||||||||| || ||||| ||||| Sbjct 1632 CCACCACGGAGGCGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTC 1573 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| || ||||| || | || |||||||| ||| Sbjct 1572 AGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGA 1513 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| || || | || ||| | || || || ||||||| ||| ||| Sbjct 1512 ATGCCTTCCTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAACT 1453 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| ||||||| |||||| || || || ||||| Sbjct 1452 TCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 >seq574 Length=30825 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || || || || | ||||| || || |||||||||||||| Sbjct 26569 CCACCGCGAAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 26628 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || |||||||| || || || || ||||||||||| | || || ||||| ||| Sbjct 26629 ATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGA 26688 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| | || ||| ||||||| ||||| |||| || || Sbjct 26689 ATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCCACC 26748 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| ||||| | || || ||||| |||||||| || Sbjct 26749 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATCTGCATCTT 26798 >seq1010 Length=27177 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 |||||||||||||| || | ||||| ||||| ||||| || || || ||||| |||||| Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | |||||||| || ||||| |||||||| || || ||||| | ||| || ||||| Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAA 25695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046723361200374