Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq574 141 2e-28 seq1010 140 8e-28 seq598 132 1e-25 >seq574 Length=30825 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || |||||||| |||||||| || ||| Sbjct 26792 CAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCTGAC 26733 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || || || || || |||||||| Sbjct 26732 ACCATCGATAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGACCAGCAG 26673 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| |||||||||||||| | || | ||| || ||| || Sbjct 26672 CGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGCGACTACAACATC 26613 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 26612 CAGAAGGAGAGCACTCTGCACCTCGT 26587 >seq1010 Length=27177 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||||||||| || || ||||| || Sbjct 25696 TTTCGTAAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGAT 25637 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || |||||| ||||||||||| || || || || |||||||| || |||||||| Sbjct 25636 CGATAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGACT 25577 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| || || || | || || ||||||| ||| ||||||| Sbjct 25576 GATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAAA 25517 >seq598 Length=71582 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| || || || ||| || ||| Sbjct 953 CAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCCGAC 1012 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||||||||| || || || || ||||| || || Sbjct 1013 ACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAG 1072 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | ||||| |||| || || | Sbjct 1073 CGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAATATT 1132 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || |||||||||| Sbjct 1133 CAGAAAGAGTCCACGTTGCATCTTGT 1158 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || ||||| || | || || ||| || ||| Sbjct 1181 CAAATCTTCGTCAAGACATTAACCGGCAAGACGATTACGTTGGAAGTCGAATCGTCCGAC 1240 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || || |||||||| |||||||| Sbjct 1241 ACCATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAGCAG 1300 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| |||||||| || || ||||| |||| || | || || ||| || Sbjct 1301 CGCCTGATATTCGCTGGAAAACAACTTGAGGATGGCCGGACCCTCTCTGACTACAACATC 1360 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || |||| || || Sbjct 1361 CAGAAAGAGTCCACTTTGCACCTCGT 1386 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || |||||||| || ||||| || || || || ||||| || ||||| Sbjct 744 TCACTGGCAAGACGATCACTCTTGAGGTAGAGTCGTCTGATACTATCGATAATGTCAAGT 803 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || ||||| ||||| ||||| | ||||| ||||||| Sbjct 804 CCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAACGCTTGATCTTTGCCGGAA 863 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 ||||| | || ||||| ||||| || |||| || || | || ||||| ||||| || | Sbjct 864 AACAGTTGGAGGATGGCAGGACCCTGTCCGACTACAATATTCAGAAAGAGTCAACGCTAC 923 Query 178123 ATCTTGT 178129 ||||||| Sbjct 924 ATCTTGT 930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203712985666114