Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq598 154 1e-32 seq574 134 1e-26 seq1010 107 2e-18 >seq598 Length=71582 Score = 154 bits (170), Expect = 1e-32 Identities = 176/230 (77%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| | ||| | || ||||||| |||| ||| |||||||| || |||||||| Sbjct 1176 CCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGAC 1117 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || || || |||||||||||||| |||| |||| Sbjct 1116 AGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGA 1057 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| | |||| ||||| | | || | |||||| ||| || Sbjct 1056 ATGCCCTCCTTGTCC-TGAATCTTTGACTTCACATTATCG--ATGGTGTCGGACGATTCG 1000 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || ||||| || || |||| |||||| ||||| || ||||| Sbjct 999 ACTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || |||| ||| ||| ||||| ||||| ||||| ||| Sbjct 1404 CCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1345 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || || || || ||||||||||||||||| ||||| | || Sbjct 1344 AGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGG 1285 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | || | | ||| | | | |||||| ||| || || Sbjct 1284 ATGCCCTCCTTATCC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGAC 1226 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| ||||| || || || | ||||| ||||| || ||||| Sbjct 1225 TTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || |||| ||||| || |||||||||||||||||| Sbjct 1632 CCACCACGGAGGCGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTC 1573 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || || || || || ||||| |||||||||||||| | ||| Sbjct 1572 AGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGA 1513 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||||| |||| ||| | | | || || || || || Sbjct 1512 ATGCCTTCCTTGTCTTGTATTTTCGACTTC-ACGTTGTCAATCGTATCCGAAGATTCAAC 1454 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || |||||||| ||||| || || || ||||| Sbjct 1453 TTCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 >seq574 Length=30825 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | || || ||||| |||||||||||||| ||||| |||||| Sbjct 26567 CGCCACCGCGAAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 26626 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | ||| || | || ||||||||||| ||||| || || |||||||| ||||| | || Sbjct 26627 TCATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGG 26686 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 ||| || |||||| ||| ||| | || | | ||| | | ||||| |||||| Sbjct 26687 GAATGCCCTCCTTATCC-TGAATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCC 26745 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || ||||| || || || ||||| |||||||| || Sbjct 26746 ACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATCTGCATCTT 26798 >seq1010 Length=27177 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || ||||| || ||||| || || || |||| || ||||||||||||||||| | Sbjct 25515 CCTTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 25574 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| || ||||| |||| |||| || |||||| ||| ||| | || | || || Sbjct 25575 TCAGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCC-TGAATCTTGGATTTGACATTA 25633 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| |||||| ||||| | || || || || ||||| || ||||||||| Sbjct 25634 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACG 25693 Query 41852 AAA 41854 ||| Sbjct 25694 AAA 25696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462297175237200