Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq24 140 3e-28 >seq24 Length=328731 Score = 140 bits (154), Expect = 3e-28 Identities = 205/290 (71%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| |||||||| || ||| ||| | |||||||| ||||||||||| |||||| Sbjct 173459 ATATAGGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGA 173400 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 |||||||| ||||| ||||| || | || ||||| || || ||| || || | | Sbjct 173399 AATCCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAG 173340 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 ||||| || ||||||||||| ||||||||||| |||| || || | ||||| Sbjct 173339 TTTTCATTGACGATGCCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATAC 173280 Query 17414 TTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACT 17467 |||||||| | || ||| |||||| | || || ||||| | ||| | | Sbjct 173279 TTTTCGTCATCATTCAG---GCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATT 173223 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || |||| |||||||| ||| ||||||| || ||||| | |||||| Sbjct 173222 TCCTCGGCTGTCCAAAATGAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Score = 116 bits (128), Expect = 4e-21 Identities = 314/471 (67%), Gaps = 16/471 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | ||| || |||||||||||||| ||||||||| |||| ||||| || ||| Sbjct 174083 TGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTTTCC 174024 Query 16736 ATGAAATCAAAAGGATT--AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||||||||| ||||| | | ||| | || |||| || |||||| || ||| | Sbjct 174023 ATGAAATCAAAGGGATTTGACGACCTGTACATCTTTT--CGTTGCCCAGTGCGACGAGAA 173966 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTA-TAAG 16851 | || || || || || ||||| || ||| || | || |||||| || | ||| Sbjct 173965 GGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGC-GTTCATGCCAAGTAAT 173907 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA- 16910 || | || || ||||| || | |||| ||| || || | || || || | || | Sbjct 173906 GCGCA-GGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGAT 173848 Query 16911 -TACTAG--CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATG 16967 | ||| | || || || | ||| | ||| || || || ||||||| Sbjct 173847 GTCATAGATGACCTGTTTGCTGGCCCGG----TTTTTGAGGTGCGAGTGCAGGAGACATG 173792 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | || || || || || || |||| || |||||||| ||||| ||||| || | Sbjct 173791 CAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAG 173732 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || ||||| | ||| || || | ||| || | ||| |||||| |||| Sbjct 173731 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATAC 173672 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 ||||||| | ||||| || | || |||| || ||| | || ||||| Sbjct 173671 CCTCGACCGCGGCAAAGGCCACCAAGCGTTGAGCAAACGATGAGTTTTTGT 173621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541860733040