Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq24 114 1e-20 >seq24 Length=328731 Score = 114 bits (126), Expect = 1e-20 Identities = 199/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| ||||| ||||| | ||| | || ||||| |||||||| || |||||| Sbjct 173459 ATATAGGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGA 173400 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 ||||| |||||||| || ||||| | || || || || || || || || ||| | Sbjct 173399 AATCCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAG 173340 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 || ||||| ||||| ||||| || || ||||| |||| ||||| | ||||| Sbjct 173339 TTTTCATTGACGATGCCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATAC 173280 Query 16652 TTTTCGTCA-GATGTA--AGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 ||||||||| || | | | | ||| || | || || ||||| | ||| | ||| Sbjct 173279 TTTTCGTCATCATTCAGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCC 173220 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 || | |||||||| ||| ||||||| || ||||||| |||||| Sbjct 173219 TCGGCTGTCCAAAATGAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410705030960