Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24 120 4e-22 >seq24 Length=328731 Score = 120 bits (132), Expect = 4e-22 Identities = 226/332 (68%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| |||||||| ||||||||| | | | | | || || | ||| ||||| ||| Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | || || | || || || ||||| || || || |||||||||||||| || Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | ||||||| ||||| || || | || || || | || |||||||| || || Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 ||||| ||| || ||||| |||| | || | |||||| |||||||| | Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265 Query 24597 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 | | || ||||| |||| | || || || | ||| | ||| || ||||||||||| Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || ||||||||||| || ||||| | ||| || Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 |||||| || || ||| | ||| || |||| ||| | |||||||||||| || | Sbjct 173796 ACATGCAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAA 173737 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| ||||||||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 173736 GCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAA 173677 Query 24254 AATTCCTTCTACTGCCGCAAAGGC 24277 || || || || || |||||||| Sbjct 173676 GATACCCTCGACCGCGGCAAAGGC 173653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717310361440