Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq24 145 8e-30
seq12 104 2e-17
>seq24
Length=328731
Score = 145 bits (160), Expect = 8e-30
Identities = 203/284 (71%), Gaps = 3/284 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || || ||||| | |||||| | || ||
Sbjct 173173 ATTTGGCAAATGTACAAGAAGGCAGAGGCCTCATTTTGGACAGCCGAGGAAATAGATCTC 173232
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| | |||||| | ||| |||| || |||| |||| |
Sbjct 173233 TCCAAGGACTTGCATGACTGGAACAACCGCCTGAATGATGACGAAAAGTATTTTGTGTCC 173292
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | |||||||||||||||||| |||||||||||||| || || |||| |||||
Sbjct 173293 CACATCCTGGCCTTTTTCGCCGCCTCGGACGGCATCGTCAATGAAAACTTGGTTGAGCGG 173352
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| ||| | ||||||| || ||||||||||| |||||||| |||
Sbjct 173353 TTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATTATGATG 173412
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
|||||| | ||||| || | || || ||| ||||| || ||
Sbjct 173413 GAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACCTA 173456
Score = 125 bits (138), Expect = 7e-24
Identities = 267/395 (68%), Gaps = 8/395 (2%)
Strand=Plus/Plus
Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043
|||||||| ||||| | ||||||||| | || | | | | || | | ||| ||
Sbjct 173590 AAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCATCGTTTGCTCAACGCTTG 173649
Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103
|||||||| || || |||||||| |||||||| || || ||| |||| || |||
Sbjct 173650 GTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCATCTTCTGG 173709
Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163
|||||||| || ||||||||||| ||| |||| || |||||| ||||| || | ||
Sbjct 173710 CTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGAT 173769
Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223
|| ||| |||| |||||||| ||| | ||| | ||| | | || | |||
Sbjct 173770 GAAGGTTTGCACACGGACTTTGCATGTCTCCTGCACTCGCACCTCAAAAACCGGGCCAGC 173829
Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283
| | || || ||| ||||||| || ||||||||||| || || || |||
Sbjct 173830 AAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAACAAGAATTTCTAACC 173889
Query 117284 GAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC---GATGTCGCAATACAT 117339
||||| ||||| |||| | || || | || || || |||| ||| || ||
Sbjct 173890 GAAGCCCTGCC-CTGCGCATTACTTGGCATGAA---CGCTACCTTGATGAAGCAGTATAT 173945
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374
||||||||| |||||| | || || ||| ||||
Sbjct 173946 CGAGTTCGTTGCCGACCGCCTTCTCGTCGCACTGG 173980
>seq12
Length=470578
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || | || ||||| || ||||| | || |||||| | ||
Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| ||||| | ||||| ||||| || ||| | || ||
Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAA 224004
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || ||||| ||||| || || | || || || ||| ||||||
Sbjct 224005 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAAC 224064
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||| ||| ||||| |||| || || | || ||| | |||||
Sbjct 224065 ATCCAGAAAGAGTCCACGTTGCACCTTGTCCTTCGTTTGCGCGGCGG 224111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215477541280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |