Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq24 145 8e-30 seq12 104 2e-17 >seq24 Length=328731 Score = 145 bits (160), Expect = 8e-30 Identities = 203/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || || ||||| | |||||| | || || Sbjct 173173 ATTTGGCAAATGTACAAGAAGGCAGAGGCCTCATTTTGGACAGCCGAGGAAATAGATCTC 173232 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | |||||| | ||| |||| || |||| |||| | Sbjct 173233 TCCAAGGACTTGCATGACTGGAACAACCGCCTGAATGATGACGAAAAGTATTTTGTGTCC 173292 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||||||||||||| |||||||||||||| || || |||| ||||| Sbjct 173293 CACATCCTGGCCTTTTTCGCCGCCTCGGACGGCATCGTCAATGAAAACTTGGTTGAGCGG 173352 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || ||||||||||| |||||||| ||| Sbjct 173353 TTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATTATGATG 173412 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||| | ||||| || | || || ||| ||||| || || Sbjct 173413 GAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACCTA 173456 Score = 125 bits (138), Expect = 7e-24 Identities = 267/395 (68%), Gaps = 8/395 (2%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| | ||||||||| | || | | | | || | | ||| || Sbjct 173590 AAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCATCGTTTGCTCAACGCTTG 173649 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||||||| || || |||||||| |||||||| || || ||| |||| || ||| Sbjct 173650 GTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCATCTTCTGG 173709 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || ||||||||||| ||| |||| || |||||| ||||| || | || Sbjct 173710 CTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGAT 173769 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 || ||| |||| |||||||| ||| | ||| | ||| | | || | ||| Sbjct 173770 GAAGGTTTGCACACGGACTTTGCATGTCTCCTGCACTCGCACCTCAAAAACCGGGCCAGC 173829 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | || || ||| ||||||| || ||||||||||| || || || ||| Sbjct 173830 AAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAACAAGAATTTCTAACC 173889 Query 117284 GAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC---GATGTCGCAATACAT 117339 ||||| ||||| |||| | || || | || || || |||| ||| || || Sbjct 173890 GAAGCCCTGCC-CTGCGCATTACTTGGCATGAA---CGCTACCTTGATGAAGCAGTATAT 173945 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 ||||||||| |||||| | || || ||| |||| Sbjct 173946 CGAGTTCGTTGCCGACCGCCTTCTCGTCGCACTGG 173980 >seq12 Length=470578 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || ||||| | || |||||| | || Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| ||||| | ||||| ||||| || ||| | || || Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAA 224004 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | || || || ||| |||||| Sbjct 224005 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAAC 224064 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| ||||| |||| || || | || ||| | ||||| Sbjct 224065 ATCCAGAAAGAGTCCACGTTGCACCTTGTCCTTCGTTTGCGCGGCGG 224111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215477541280