Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 100 4e-16 >seq12 Length=470578 Score = 100 bits (110), Expect = 4e-16 Identities = 167/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||| |||| ||||| || || ||| | || | ||| | Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || |||||| || || || || ||||| || ||||||||| Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAA 224004 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | |||||| | ||||| | ||||| || Sbjct 224005 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAAC 224064 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || || ||||| || || ||||| | || | ||||| || || ||||| ||| |||| Sbjct 224065 ATCCAGAAAGAGTCCACGTTGCACCTTGTCCTTCGTTTGCGCGGCGGTATGCAAATATTC 224124 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| | || || || || || ||| | || ||||| | Sbjct 224113 ATGCAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCG 224172 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || |||||| ||||| || ||||| || || || || ||| Sbjct 224173 GATACGATTGACAATGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCCCCCGACCAA 224232 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||| | || ||| | || || | ||||| ||| Sbjct 224233 CAGCGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACAAT 224292 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| |||||| |||||||| | || | ||| | || ||||| Sbjct 224293 ATTCAGAAAGAAAGCACTTTGCACCTTGTGCTGCGTCTTCGTGGTGG 224339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450541830400