Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq70 113 4e-20 seq12 107 2e-18 seq14 91.5 1e-13 seq69 89.7 4e-13 >seq70 Length=137430 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || ||||| || ||||||| || || ||| |||||||| ||||| || | Sbjct 82944 CTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAA 82885 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||| |||||||| ||||| || |||||||||||||| ||| || || || | Sbjct 82884 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 82825 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||| | ||| ||||| | || | || || || || || ||||| || Sbjct 82824 GTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGAC 82765 Query 118727 AAAAATCTGCAT 118738 ||| |||||||| Sbjct 82764 AAAGATCTGCAT 82753 >seq12 Length=470578 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| || | | || | ||| | || |||||||| || |||||||||||| Sbjct 224113 TACCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGG 224054 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || |||||| ||||| || ||||| |||| || ||||| ||||| || | Sbjct 224053 ACAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGG 223994 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| ||||| || || | |||| |||||| | |||| Sbjct 223993 GAATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGA 223934 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||| ||||| || | || || ||||| || ||||| Sbjct 223933 CTTCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| ||||| ||||||||||||| ||| || ||| || || |||||||| || | Sbjct 224303 TCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAAT 224244 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||| ||||| || ||||| || ||||| ||||||||| ||||| || || | Sbjct 224243 ATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTG 224184 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | || |||| || || || | || | ||| || || |||| ||| || || Sbjct 224183 TCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACG 224124 Query 118728 AAAATCTGCAT 118738 || || ||||| Sbjct 224123 AATATTTGCAT 224113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| || | || || | || | ||||||||| || ||||||||||| ||| Sbjct 223885 TACCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGG 223826 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | |||||| | ||||||||| || |||| | || || |||||||||| Sbjct 223825 ACAAGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAG 223766 Query 118630 GTATGCCCTCCTTGTC 118645 | || ||||||||||| Sbjct 223765 GAATACCCTCCTTGTC 223750 >seq14 Length=772799 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| |||||||||||| || || || ||| || ||||| || || ||| |||| Sbjct 69850 TTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATC 69909 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || || || ||||| ||||| || ||||||| || ||| || ||||| | ||| Sbjct 69910 AGTCGTTGTTGATCCGGAGGAATAACCTCCTTATCCTGAATCTTGGATTTAAAGTTATCG 69969 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | || |||| ||||||||||| ||| | |||||||| || || || || || ||| Sbjct 69970 ATCGTTTCCGACGACTCGACCTCGAGGGTGATGGTTTTGCCCGTTAGGGTCTTGACGAAA 70029 >seq69 Length=174959 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 |||||||||| || |||||||| || || ||||||| | || | || |||||| | | Sbjct 172242 GGTTGACCACCTGGAACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAG 172301 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || || |||| ||| | ||||| ||||| |||| Sbjct 172302 GCTCGAAGCACTCGTTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCA 172361 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACT 133368 ||| || | ||| | || ||| |||| Sbjct 172362 CCAGCAGACTGTTGCGTATGCCATACT 172388 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 134121 TTGTTCTTTACGCGTTTCATGAATAGATCGGGAATCCACAGGCCGAGCATTAAATCGCGA 134180 || |||| ||||| |||||||| || ||||||||||||||| | | | | |||||| Sbjct 173126 TTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGA 173185 Query 134181 GCTTTAGTGTCTTCGGAGCCCATGTTGCGT-CTCAAGTTGAGAAACTCATAAATTTCCGG 134239 ||| | || || | ||||| | | | | ||| | ||||||||| | | || | Sbjct 173186 GCTCGAACCTCCTCCTTG-CCATGGTTCTTGCGCAAATCCAGAAACTCAAAGACATCAGC 173244 Query 134240 ATGCCA-CGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGC---TTACCACCCTGGTCGA 134295 |||||| ||||| | ||| ||| | ||||||| ||| || || |||||||||| Sbjct 173245 ATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGA 173304 Query 134296 CGTGACGCACCATGTTGTTGAAGAC 134320 ||| || || ||||||| ||||| Sbjct 173305 CGTAGCGGGCCGTGTTGTTAAAGAC 173329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827343935976