Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq70 122 7e-23 seq12 116 3e-21 >seq70 Length=137430 Score = 122 bits (134), Expect = 7e-23 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAG 45189 |||||| |||||||||||||| ||||| |||||| |||| | ||| ||| ||| || Sbjct 82956 GTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCTTCG---AG 82900 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || |||||||| || || | ||||| |||||||| || | |||||||||||| ||| Sbjct 82899 CTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAAT 82840 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | |||| | ||||||||| | || || ||||| || Sbjct 82839 CTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCC 82780 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || || || || |||||||| ||||| |||||| Sbjct 82779 TGTGAGGGTTTTGACAAAGATCTGCATCTTGCCT 82746 >seq12 Length=470578 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||||| || |||||||| ||||| ||| |||| || | || |||||||| Sbjct 224316 GTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCATCTTCCAGTTG 224257 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||| ||||| | |||||||||||||| || | || |||||||| ||||| Sbjct 224256 TTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTT 224197 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||| | || || |||| ||||||||||| ||||| Sbjct 224196 CGACTTCACATTGTCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGT 224137 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||| || || |||||||| Sbjct 224136 CAAAGTCTTGACGAATATTTGCAT 224113 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| |||| ||| ||||| |||||||| ||| ||| || | || || || || Sbjct 224088 GTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCAAGCTG 224029 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| |||||||| || || || | ||||||||||||| ||||| Sbjct 224028 CTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGGATTTT 223969 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| || || |||| || ||||||||||| || Sbjct 223968 CGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTCTTGCCAGT 223909 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 | |||||||||||||||||||| Sbjct 223908 TAATGTCTTCACAAAGATTTGCAT 223885 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || | | || |||| ||||||||||| || Sbjct 223848 CTCCTTCTGAATGTTGTAGTCGGACAAGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAA 223789 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| |||||||| | ||||||||||||| Sbjct 223788 GATCAAGCGTTGTTGATCGGGAGGAATACCCTCCTTGTCC 223749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072416942138