Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq69 408 4e-109 seq24 168 6e-37 seq12 116 3e-21 >seq69 Length=174959 Score = 408 bits (452), Expect = 4e-109 Identities = 1377/2113 (65%), Gaps = 54/2113 (3%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 || ||| || || ||||| || |||| || |||| || || || || || ||||||| Sbjct 171894 CTGGTCTACCGTGAACTGGATAGGCGCC-GCCGCCGCTTGCGTACGCAGGTAGTACATGC 171952 Query 22164 CCG-TCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 | | | || || |||| |||||| | |||||| || || | ||| || || Sbjct 171953 CGGGTTTTGAGCCCCAGCTTCCAACCAGTAAAATGCATGCTGGTGATTTTGCCCA---TC 172009 Query 22223 GGCAAGTC---CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279 | | ||| ||||| | |||| |||||| ||| |||||||| || || || ||| Sbjct 172010 GACGGGTCTTTCATGTGAATGTTGAGCGACTGGGACTGGTCGATAAAAGCACCCCGGTCG 172069 Query 22280 GCGGCCATATTTATCAA-TGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 || ||||| | | || ||| ||| ||| || ||||| ||||||||||| ||| | Sbjct 172070 GCCGCCATCTGCACCACCTGT-CGCTGCGAAATCTCCCAGACGGTCTTGTAAAGTGCTTT 172128 Query 22339 GATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398 || || || || ||| |||| | ||||||||| | ||||| || Sbjct 172129 GACGTCGGCGGGGATGTTGGGGATGTTCTGTATGGACCCGTTTTCCGCAATGATTCGGTT 172188 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 || |||| || ||| || || | | || || ||| |||| ||| |||| || Sbjct 172189 CTTCATCGCGTCCGACCATAAGCCCAAGTCGACCAGATCCTTGAGCAGCCAGGGGTTGAC 172248 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 ||| || |||||||| | || ||||| || ||||| |||||||| ||| | || ||||| Sbjct 172249 CACCTGGAACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAA 172308 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 | || ||||| || || || || | || || |||||||| || |||| ||| || Sbjct 172309 GCACTCGTTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCAG 172368 Query 22579 CGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTG-AGCATCGACCAGTCCCACAG 22635 ||| | | ||| | || |||| | | ||| | ||| | ||| ||||| || Sbjct 172369 ACTGTTGCGTATGCCATACTCCTTGA---TCTGCTCCCGGAGCGTTTCCCACTCCCAGAG 172425 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG--CGACTCGCCGGG 22693 || || ||| |||| || ||||||||| | || | |||||| |||| || || Sbjct 172426 CTCTGAAGGCTTCACCTT---CCACATATCAAACTGGAGCACGCCCTCCGAC--GCAGGC 172480 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753 |||| ||| ||| || || | || || || || || |||| Sbjct 172481 GATCCTTTAAACGACGAGTAGGGCCCTTCGCTCTTTGCCAGCTCCATTGAGGCAGTCAAC 172540 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCT 22809 ||| ||| || || |||||||| ||||||| ||| | || ||| || ||| Sbjct 172541 GCGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTTAGCTCCCGGGCCTCCGGAGAC--- 172597 Query 22810 TTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGAT 22869 || ||||||| || | || || || || |||| ||||| || || | ||| || Sbjct 172598 -TCAAACGGCATGCGGAGAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCAAT 172656 Query 22870 CGGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCG 22927 |||||||| || || | ||||| |||| | || || || ||| Sbjct 172657 CGGTCGGTGGCGCATGTTG--CTGTTTTGGGCCTCTTCAACTGGGTAATGGTTGACGTCG 172714 Query 22928 ATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCG 22987 || | || || | ||| | | || | | ||| | | |||||| Sbjct 172715 ATGATCCTATTGAGGTTACGGACGACGACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCG 172774 Query 22988 TAAACGCCC-GATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACG 23044 || |||| | | || | || || | ||| | |||||| |||||||| || Sbjct 172775 TAGCAGCCCTGGTCATAGTCGACGAAGGCAGGCAGGGCTAGCGAGGCCAGATTGCAGACA 172834 Query 23045 GCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATC 23104 || || || || | | |||||| || ||||| || || || || || | || Sbjct 172835 GCAACTTCATCAGGTGCAGAGTACTCAACGATTTCCGTGCAAAGGTTCGAACTCCGAATG 172894 Query 23105 GTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGC 23164 ||||||| || | || ||||| || || ||||| ||||||||| |||||| |||| Sbjct 172895 GTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAATGATCCTTGTACAGCATGAACGGG 172954 Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGT 23224 ||||||| || ||| || | ||| | ||||| ||||||| | || ||| Sbjct 172955 TTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACCACAGCTTCTGAGCCCGCAC-CGT 173013 Query 23225 CGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA 23283 | || | | ||| || ||||||||||| ||||| || |||||||| | ||||| Sbjct 173014 CTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCGCCGTA 173073 Query 23284 ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTC 23343 ||||||||||| ||||| ||| | || |||||||| |||| || || || Sbjct 173074 GCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCGTCCAATCACCGTTTTTCTC 173133 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 ||||| |||| || || || || ||||| || || |||| || ||||| || || || Sbjct 173134 CACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGAGCTCGAAC 173193 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA-CG 23462 |||||| ||||| |||||| |||||||| ||| || || || || |||||||| | Sbjct 173194 CTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAAACTCAAAGACATCAGCATGCCATTG 173253 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||| ||||| | |||||| || || || | ||| ||||||||||| |||||||| |||| Sbjct 173254 GCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGG 173313 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCG 23582 |||||||||| | || | ||||| || | || |||||| || | ||| ||| | Sbjct 173314 CCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTCCCGTTGGTGCCGG 173373 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | | || || | || || | || |||| || || ||||| ||| || | Sbjct 173374 CAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCACCGGCCATCT 173433 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| ||||| || || |||||||| ||||||||||||||||| || || Sbjct 173434 TAGAGATCATGGCGCACGTCTTGAGCGTGTCGTAAATGCCCTCGATGCTGTCATCCTTCA 173493 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-GGCGTAGCGGCCGAGAACAGTGTC 23761 | | || | ||| ||||| |||| ||| || || ||||| | || |||||| | | Sbjct 173494 TGTCAACGAGGAAGCACGAGGACAGTTG-GCACTGAGGCGTGCCAGCGTTGAACAGCGCC 173552 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821 || || || || ||| | ||||| || |||||||| |||| | | || Sbjct 173553 GGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTACGTTTCGAGGACTCGGTCG 173612 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 || | || || |||||| | ||| |||||||| ||||||| ||| || | ||| || Sbjct 173613 ATATTGTCGCCCCATATACCCACGGCAACGCGCATGATCATGTGTTGGGGGCGCTCAACG 173672 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 | ||||| | || | |||||| ||||| | || || || || |||||||| | | Sbjct 173673 ATCTTGCCGTCGAGCTTCAGCAGATAAGAACGCTCCAGAGTCTTGAAGCCAAAATACTGA 173732 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATG 24001 ||||||||||| || || | | ||||||||| || | | || | ||| || ||| Sbjct 173733 TAGTTAAAGTCCCGGTCATAGATGATGGCCGAA-TCGAGC-CTA-TCCTTGTGCGCCATG 173789 Query 24002 AT---GTTGTAATGAAAATTCGATATCATCGGCGTTTTAACGCCGG-TCTTTGGATCGAT 24057 || || ||| | ||| ||||| |||| ||| || |||| || | ||| Sbjct 173790 ATGCAGTCGTACGTTTCCTGCGAGATCATGGGCG-ACGCTCGCTGGTTCTTGGGGTTGAT 173848 Query 24058 CGCTTCATACATATCGATAATGA-CATCGAAAAAAGAATCTTTAGTCTCCTTGTGCAAAT 24116 | |||| ||| | | || | ||| | | || || |||| |||||||| | Sbjct 173849 GTAGTGGTACAAGTCGCTGACGACCGACGACCATTGCTTC-TTGGTCTGCTTGTGCAGGT 173907 Query 24117 TAGACACGGCCAATCTAGCCGCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCG 24176 | || ||||| | | |||||| || | | |||||||| |||| || ||||||| | Sbjct 173908 TGGAGACGGCAATACGAGCCGCGAGAATGGCATAGTCGGGATGAGTGACGGTCATGTAGG 173967 Query 24177 CTGCCGTCTCGGC 24189 | ||||||||||| Sbjct 173968 CAGCCGTCTCGGC 173980 >seq24 Length=328731 Score = 168 bits (186), Expect = 6e-37 Identities = 312/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || ||||| ||||| ||||| |||||| || |||||| | || || ||| | Sbjct 173653 GCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCATCTTCTGGCTC 173712 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||||| ||| |||| ||| |||||| | || ||||| || || Sbjct 173713 AAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGATGAA 173772 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGG 58160 ||| | || || || ||||| || || || |||| ||| | ||| || | | | | Sbjct 173773 GGTTTGCACACGGACTTTGCATGTCTCCTGCACTCGCACCT---CAAAAACCGGGCCAGC 173829 Query 58161 GATCG---CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | | ||||| ||||| |||||||| || ||||| |||||| | || ||| | ||| Sbjct 173830 AAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAACAAGAATTTCTAACC 173889 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 |||||||| || || | || || |||||| | |||||| |||| || ||| Sbjct 173890 GAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCTACCTTGATGAAGCAGTATATCGAG 173949 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACTG---ATTGGAGAGCGTCAT-TACAACACGAA 58333 || ||||||||| | ||| | ||| |||| | | | || || |||| || Sbjct 173950 TTCGTTGCCGACCGCCTTCTCGTCGCACTGGGCAACGAAAAG----ATGTACAGGTCGTC 174005 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 |||||| |||||||| ||| | || ||||| | |||||| || |||||||||||||| Sbjct 174006 AAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAAACCAACTTTTTCGAAAA 174065 Query 58394 aaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||| | || ||||| || ||| || ||| Sbjct 174066 GCGGGTTGGTGACTATCAGAAGGCCGGTGTCATG 174099 >seq12 Length=470578 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || ||||| || | || |||||| | || Sbjct 224113 ATGCAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCG 224172 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || |||| |||||||||||| | || |||||||| Sbjct 224173 GATACGATTGACAATGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCCCCCGACCAA 224232 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || ||||| || || ||||| ||||||| | | | ||| |||||||||| || Sbjct 224233 CAGCGCCTCATATTTGCCGGAAAACAACTGGAAGA-TGGACGTACTCTGAGCGATTACAA 224291 Query 31372 CATTCAAAAAGAA 31384 ||||| |||||| Sbjct 224292 TATTCAGAAAGAA 224304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763179337760