Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq24 104 5e-17 >seq24 Length=328731 Score = 104 bits (114), Expect = 5e-17 Identities = 303/468 (65%), Gaps = 29/468 (6%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| || || || || ||||||||||||||||| || || ||||| |||||| Sbjct 173650 GTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCATCTTCTGG 173709 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| | |||| ||||| || ||||||| | || Sbjct 173710 CTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGAT 173769 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTG---------TTGAAAAA--GGGTTTTG 102086 |||||| | || ||||||||||| | ||| | ||||| ||| Sbjct 173770 GAAGGTTTGCACACGGACTTTGCATGTCTCCTGCACTCGCACCTCAAAAACCGGG----- 173824 Query 102087 TTGATACCCCATCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGA 102144 ||| ||| | ||| || ||| || |||| || |||||| || || Sbjct 173825 --------CCAGCAA---ACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGA 173873 Query 102145 ACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGAT 102204 |||||||||||| || | ||||||| |||| | || |||||| | ||||| Sbjct 173874 ACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCTACCTTGAT 173933 Query 102205 GAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCA 102264 || ||||| || || || || || || || | || | | |||| |||||| Sbjct 173934 GAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCACTGGGCAACGAAAAGAT 173993 Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324 || | | || ||||| |||||||| || || || || | | || ||||| Sbjct 173994 GTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAAACCAA 174053 Query 102325 CTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGC 102372 |||||| |||||| | || | || ||||| ||| |||||||| Sbjct 174054 CTTTTTCGAAAAGCGGGTTGGTGACTATCAGAAGGCCGGTGTCATGGC 174101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989576671511990