Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq24 114 2e-20 >seq24 Length=328731 Score = 114 bits (126), Expect = 2e-20 Identities = 225/332 (68%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||||| |||||||| ||||||||| | | | | | || || | ||| ||||| ||| Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | || || | || || || ||||| || || || |||||||||||||| || Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | ||||||| ||||| || || | || || || | || |||||||| || || Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 ||||| ||| || ||||| |||| | || | |||||| ||||||| | Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265 Query 36620 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 36676 | | || ||||| |||| | || || || | ||| | ||| || ||||||||||| Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205 Query 36677 GATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 || ||||||||||| || ||||| | ||| || Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Score = 102 bits (112), Expect = 1e-16 Identities = 289/439 (66%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || || || ||||| || || ||||||||||| || ||||| || ||| ||||| ||| Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027 Query 35927 TCCATGAAATCGAATGGATT-GATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||||||||| || ||||| || || | || || |||| |||| | | | Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTG-TACATCTTTTCGTTGCCCAGTGCGACGAG 173968 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 | | || || || || || ||||| ||||||| | ||||| || | | Sbjct 173967 AAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAA 173908 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | || || || | || |||||||||||||| || | ||| || || || || || Sbjct 173907 TGCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGAT 173848 Query 36106 ---AGATATTAC-TGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 36161 | | || || ||||| | | |||| | | || || | ||||| Sbjct 173847 GTCATAGATGACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTG----CAGGAGACATG 173792 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | || || ||| | ||| || |||| ||| | |||||||||||| || | || | Sbjct 173791 CAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAG 173732 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 36281 |||| ||||||||||| || ||||| || ||||| ||||| | ||| |||||| || | Sbjct 173731 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATAC 173672 Query 36282 CTTCTACTGCCGCAAAGGC 36300 | || || || |||||||| Sbjct 173671 CCTCGACCGCGGCAAAGGC 173653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168044701520