Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq24 114 2e-20
>seq24
Length=328731
Score = 114 bits (126), Expect = 2e-20
Identities = 225/332 (68%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439
||||| |||||||| ||||||||| | | | | | || || | ||| ||||| |||
Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445
Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499
| || || | || || || ||||| || || || |||||||||||||| ||
Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385
Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559
| ||||||| ||||| || || | || || || | || |||||||| || ||
Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325
Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619
||||| ||| || ||||| |||| | || | |||||| ||||||| |
Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265
Query 36620 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 36676
| | || ||||| |||| | || || || | ||| | ||| || |||||||||||
Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205
Query 36677 GATGCCTCTGCCTTTTTATACATATTCCAGAT 36708
|| ||||||||||| || ||||| | ||| ||
Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173
Score = 102 bits (112), Expect = 1e-16
Identities = 289/439 (66%), Gaps = 10/439 (2%)
Strand=Plus/Minus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
|| || || ||||| || || ||||||||||| || ||||| || ||| ||||| |||
Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027
Query 35927 TCCATGAAATCGAATGGATT-GATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985
||||||||||| || ||||| || || | || || |||| |||| | | |
Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTG-TACATCTTTTCGTTGCCCAGTGCGACGAG 173968
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045
| | || || || || || ||||| ||||||| | ||||| || | |
Sbjct 173967 AAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAA 173908
Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105
| || || || | || |||||||||||||| || | ||| || || || || ||
Sbjct 173907 TGCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGAT 173848
Query 36106 ---AGATATTAC-TGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 36161
| | || || ||||| | | |||| | | || || | |||||
Sbjct 173847 GTCATAGATGACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTG----CAGGAGACATG 173792
Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221
| || || ||| | ||| || |||| ||| | |||||||||||| || | || |
Sbjct 173791 CAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAG 173732
Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 36281
|||| ||||||||||| || ||||| || ||||| ||||| | ||| |||||| || |
Sbjct 173731 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATAC 173672
Query 36282 CTTCTACTGCCGCAAAGGC 36300
| || || || ||||||||
Sbjct 173671 CCTCGACCGCGGCAAAGGC 173653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658168044701520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |