Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq24 118 8e-22 >seq24 Length=328731 Score = 118 bits (130), Expect = 8e-22 Identities = 297/441 (67%), Gaps = 14/441 (3%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || || || || | ||| ||| | ||||| |||| ||||||| Sbjct 173651 TGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCATCTTCTGGC 173710 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| ||| |||||||| || ||| | ||||||||||| | ||| || || | Sbjct 173711 TCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGATG 173770 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTC 22927 ||||| | ||| |||||||| ||| | ||| ||| | ||| |||||| | | Sbjct 173771 AAGGTTTGCACACGGACTTTGCATGTCTCCTGCACTCGCACCT--CAA--AAACCGGGCC 173826 Query 22928 AGGACGATGCACATC----AAATCATATCTGATGCCGTTGACATTG-AGACGGCTTTCTT 22982 || | | |||| | ||||| | |||||||| | ||| | | | | ||||| Sbjct 173827 AGCAAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAACAAGAATTTCTA 173886 Query 22983 CCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACAT 23042 | || || || | ||||||| ||||| | | |||| | ||| || Sbjct 173887 AC-CGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCTACCTTGATGAAGCAGTATAT 173945 Query 23043 ACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTG- 23101 |||| ||||| || ||||| |||| || ||||| | | ||||||||| | || | Sbjct 173946 CGAGTTCGTTGCCGACCGCCTTCTCGTCGCACTGGGCAACGAAAAGATGTA-CAGGTCGT 174004 Query 23102 CCAATCCATTTGATTTCATGGATAACAT-TAGCATTGAAGGTAAAACAAACTTCTTTGAA 23160 | ||||| |||||||||||||| ||||| | || | | || ||||| ||||| || ||| Sbjct 174005 CAAATCCCTTTGATTTCATGGAAAACATATCGC-TAGGGGGCAAAACCAACTTTTTCGAA 174063 Query 23161 CGCCGTGTGAGTGAATATCAG 23181 || || |||| |||||| Sbjct 174064 AAGCGGGTTGGTGACTATCAG 174084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356231090556934