Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq24 102 8e-17
seq70 84.2 2e-11
seq12 84.2 2e-11
>seq24
Length=328731
Score = 102 bits (112), Expect = 8e-17
Identities = 344/521 (66%), Gaps = 21/521 (4%)
Strand=Plus/Plus
Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608
||||| || | |||||||||| || ||||| | |||||| | || | || |
Sbjct 173572 GTTCCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCA 173631
Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668
| ||||| |||| |||| || ||||| || || ||| | || ||| |||
Sbjct 173632 TCGTTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCC 173691
Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727
||||| | || || | |||| || | ||| | | ||||| ||| | || ||| |||
Sbjct 173692 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCC-TCATGCCTGGCTTGACCTTTTCCAA 173750
Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATAC 52787
||| | || ||||| || ||||| ||||||| || ||||| ||| | | | | |
Sbjct 173751 CGAACTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTCC--TGCACT-C 173807
Query 52788 GCGCGTTAAAGAAAAATTGTCATATGAAAAAAT----TCTA-GACATGTTTAAAGAGGCC 52842
|| | | ||| || | || | ||| | |||| ||||| | | || |||
Sbjct 173808 GCACCTCAAA--AACCGGGCCA---GCAAACAGGTCATCTATGACATCATCACCGATGCC 173862
Query 52843 GTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC 52902
|||| ||| ||| |||| ||| | || || || | ||| |||| | |||||||||
Sbjct 173863 GTCGCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAAC 173922
Query 52903 GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGAC-TGTTGATGCAGCTCGG 52961
|| ||| ||||| |||| |||||||| ||||| ||| | | | | | ||| || ||
Sbjct 173923 GCTACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CT-GG 173980
Query 52962 TCAGCCGAAATACTATAATGCGCGT--AACCCCTTTTCGTTTATGAACAACATATCGCTC 53019
|| ||||| | || | ||| || |||||| || ||| | |||||||||||
Sbjct 173981 GCA-ACGAAAAGATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTA 174039
Query 53020 GAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060
| ||||||||| ||||||||||| | || || || || ||
Sbjct 174040 GGGGGCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTA 174080
>seq70
Length=137430
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632
||| || || |||||||| ||||||| || | ||||||||||| || || ||| |
Sbjct 82944 CTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAA 82885
Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691
||| || || ||||| ||||| || ||||| || ||||| ||| | || | || | |
Sbjct 82884 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGT 82826
Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751
|| | ||||| | | ||||||||||| || | ||||| || || | ||||| |
Sbjct 82825 TGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGA 82766
Query 139752 CGAATATTTGCAT 139764
| || || |||||
Sbjct 82765 CAAAGATCTGCAT 82753
>seq12
Length=470578
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATA 139632
||||| ||||| || |||||||||| || | || | ||||| || ||||| || ||| |
Sbjct 224303 TCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCA-TCTTCCAGTTGTTTTCCGGCAAA 224245
Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692
|| || || || || ||||| || |||||||| ||||| ||||| || | |
Sbjct 224244 TATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACATT 224185
Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752
|| | || || | | || || || | || | |||||| || ||||| || || ||
Sbjct 224184 GTCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGAC 224125
Query 139753 GAATATTTGCATA 139765
|||||||||||||
Sbjct 224124 GAATATTTGCATA 224112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496060415937600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |