Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq24 102 8e-17 seq70 84.2 2e-11 seq12 84.2 2e-11 >seq24 Length=328731 Score = 102 bits (112), Expect = 8e-17 Identities = 344/521 (66%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | |||||||||| || ||||| | |||||| | || | || | Sbjct 173572 GTTCCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCA 173631 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 | ||||| |||| |||| || ||||| || || ||| | || ||| ||| Sbjct 173632 TCGTTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCC 173691 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 ||||| | || || | |||| || | ||| | | ||||| ||| | || ||| ||| Sbjct 173692 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCC-TCATGCCTGGCTTGACCTTTTCCAA 173750 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATAC 52787 ||| | || ||||| || ||||| ||||||| || ||||| ||| | | | | | Sbjct 173751 CGAACTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTCC--TGCACT-C 173807 Query 52788 GCGCGTTAAAGAAAAATTGTCATATGAAAAAAT----TCTA-GACATGTTTAAAGAGGCC 52842 || | | ||| || | || | ||| | |||| ||||| | | || ||| Sbjct 173808 GCACCTCAAA--AACCGGGCCA---GCAAACAGGTCATCTATGACATCATCACCGATGCC 173862 Query 52843 GTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC 52902 |||| ||| ||| |||| ||| | || || || | ||| |||| | ||||||||| Sbjct 173863 GTCGCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAAC 173922 Query 52903 GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGAC-TGTTGATGCAGCTCGG 52961 || ||| ||||| |||| |||||||| ||||| ||| | | | | | ||| || || Sbjct 173923 GCTACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CT-GG 173980 Query 52962 TCAGCCGAAATACTATAATGCGCGT--AACCCCTTTTCGTTTATGAACAACATATCGCTC 53019 || ||||| | || | ||| || |||||| || ||| | ||||||||||| Sbjct 173981 GCA-ACGAAAAGATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTA 174039 Query 53020 GAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 | ||||||||| ||||||||||| | || || || || || Sbjct 174040 GGGGGCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTA 174080 >seq70 Length=137430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || |||||||| ||||||| || | ||||||||||| || || ||| | Sbjct 82944 CTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAA 82885 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 ||| || || ||||| ||||| || ||||| || ||||| ||| | || | || | | Sbjct 82884 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGT 82826 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | ||||| | | ||||||||||| || | ||||| || || | ||||| | Sbjct 82825 TGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGA 82766 Query 139752 CGAATATTTGCAT 139764 | || || ||||| Sbjct 82765 CAAAGATCTGCAT 82753 >seq12 Length=470578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||||| ||||| || |||||||||| || | || | ||||| || ||||| || ||| | Sbjct 224303 TCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCA-TCTTCCAGTTGTTTTCCGGCAAA 224245 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 || || || || || ||||| || |||||||| ||||| ||||| || | | Sbjct 224244 TATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACATT 224185 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | || || | | || || || | || | |||||| || ||||| || || || Sbjct 224184 GTCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGAC 224125 Query 139753 GAATATTTGCATA 139765 ||||||||||||| Sbjct 224124 GAATATTTGCATA 224112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060415937600