Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq24 122 1e-22 >seq24 Length=328731 Score = 122 bits (134), Expect = 1e-22 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || ||||| || || ||||||||||| || ||||| || | | ||||| ||| Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||||||||| ||||| | | || || |||| |||| | | | Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCAGTGCGACGAGA 173967 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | || || || || || ||||| ||||||| | ||||| || | | | Sbjct 173966 AGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAAT 173907 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT- 49907 || || || | || |||||||||||||| |||| || ||||| || || || Sbjct 173906 GCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATG 173847 Query 49908 ----AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 49963 |||| | | |||| | | |||| || | || || | ||||| Sbjct 173846 TCATAGATG-ACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTG----CAGGAGACATG 173792 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | || || ||||| ||| || |||| ||| |||||||||||||| || | || | Sbjct 173791 CAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAG 173732 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083 |||| ||||||||||| || ||||| || ||||| ||||| | ||| ||||||||| | Sbjct 173731 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATAC 173672 Query 50084 CTTCTACTGCGGCAAAGGCAAC 50105 | || || ||||||||||| || Sbjct 173671 CCTCGACCGCGGCAAAGGCCAC 173650 Score = 120 bits (132), Expect = 4e-22 Identities = 226/332 (68%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 || || || ||||| ||||||||| | | | | | || || | ||| ||||||||| Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 | || || | || || || ||||| || || ||||||||||||||||| || Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361 | ||||||| ||||| || || | || || ||| | || |||||||| || || Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 ||||| ||| || ||||| |||| | || | ||||| ||||||| | Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265 Query 50422 A---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478 | | || ||||| |||| | || || || | ||||| ||| || ||||||||||| Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205 Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGAT 50510 || ||||||||||| || ||||| | ||| || Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263610507920