Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq24 122 1e-22
>seq24
Length=328731
Score = 122 bits (134), Expect = 1e-22
Identities = 293/442 (66%), Gaps = 10/442 (2%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|| || || ||||| || || ||||||||||| || ||||| || | | ||||| |||
Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
|||||||||||||| ||||| | | || || |||| |||| | | |
Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCAGTGCGACGAGA 173967
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
| | || || || || || ||||| ||||||| | ||||| || | | |
Sbjct 173966 AGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAAT 173907
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT- 49907
|| || || | || |||||||||||||| |||| || ||||| || || ||
Sbjct 173906 GCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATG 173847
Query 49908 ----AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 49963
|||| | | |||| | | |||| || | || || | |||||
Sbjct 173846 TCATAGATG-ACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTG----CAGGAGACATG 173792
Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023
| || || ||||| ||| || |||| ||| |||||||||||||| || | || |
Sbjct 173791 CAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAG 173732
Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083
|||| ||||||||||| || ||||| || ||||| ||||| | ||| ||||||||| |
Sbjct 173731 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATAC 173672
Query 50084 CTTCTACTGCGGCAAAGGCAAC 50105
| || || ||||||||||| ||
Sbjct 173671 CCTCGACCGCGGCAAAGGCCAC 173650
Score = 120 bits (132), Expect = 4e-22
Identities = 226/332 (68%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241
|| || || ||||| ||||||||| | | | | | || || | ||| |||||||||
Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445
Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301
| || || | || || || ||||| || || ||||||||||||||||| ||
Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385
Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361
| ||||||| ||||| || || | || || ||| | || |||||||| || ||
Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325
Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421
||||| ||| || ||||| |||| | || | ||||| ||||||| |
Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265
Query 50422 A---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478
| | || ||||| |||| | || || || | ||||| ||| || |||||||||||
Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205
Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGAT 50510
|| ||||||||||| || ||||| | ||| ||
Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718263610507920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |