Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq24 134 1e-26
seq12 113 5e-20
>seq24
Length=328731
Score = 134 bits (148), Expect = 1e-26
Identities = 343/509 (67%), Gaps = 21/509 (4%)
Strand=Plus/Plus
Query 50356 CGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTA-CTTTGGCCGA 50414
|| ||||||| ||| ||||| | |||| | ||||||| || | | || || |
Sbjct 173584 CGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAA-CTCATCGTTTGCTCA 173642
Query 50415 ACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCAT 50474
||| || ||||| |||||| || || ||| | || ||| ||| |||||| ||||
Sbjct 173643 ACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCAT 173702
Query 50475 ATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTT 50533
|| | | || || | | ||| | ||||| ||| | || ||| |||||| | ||||
Sbjct 173703 CTTCTGGCTCAAGAAGCGT-GGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTT 173761
Query 50534 CGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATG 50593
|||| || ||||| ||||||| |||||||| ||| | || || | || | |
Sbjct 173762 CGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTC--CTGCACT-----CGCACCTC 173814
Query 50594 AAAAATTATCATACGAAACA----ATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAA 50649
||||| | ||||| || | ||||| ||| || ||||||| |||||||
Sbjct 173815 AAAAACCGGGCCAGCAAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAA 173874
Query 50650 AAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATG 50709
|||| ||| | || || || | ||| ||||| | ||||||||||| | |||||
Sbjct 173875 CAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCTACCTTGATG 173934
Query 50710 TGCGAGTACATTGAGTTTGTTGCAGACAG-ATTGTTGTTGCAGCTGGGACAACCGAAATA 50768
|||| || ||||| ||||| ||| | || | || ||| ||||| ||| |||||
Sbjct 173935 AAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CTGGG-CAA-CGAAAAG 173991
Query 50769 CTATAATGCACGT--AACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACA 50826
| || | ||| || |||||| || ||| | ||||||||| | | |||||||||
Sbjct 173992 ATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAAACC 174051
Query 50827 AACTTTTTCGAAAGACGTGTAGGCGAATA 50855
||||||||||||| || || || || ||
Sbjct 174052 AACTTTTTCGAAAAGCGGGTTGGTGACTA 174080
>seq12
Length=470578
Score = 113 bits (124), Expect = 5e-20
Identities = 143/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCAT 143051
|||||| || || ||||||||||||| || | || | ||||| |||||||| || |||
Sbjct 224304 TTCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCA-TCTTCCAGTTGTTTTCCGGCAA 224246
Query 143052 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCT 143111
| || || || || || ||||| || |||||||| ||||| ||||| || | |
Sbjct 224245 ATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACAT 224186
Query 143112 GTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTA 143171
|| | ||| |||| | ||| ||||| | ||| | |||||| || ||||| || || |
Sbjct 224185 TGTCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGA 224126
Query 143172 CGAATATTTGCATA 143185
||||||||||||||
Sbjct 224125 CGAATATTTGCATA 224112
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || ||||| || |||||||||||| || || | || || || || || |||
Sbjct 224081 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCA 224022
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||||||| || || ||||| || || || || || ||||| ||||| ||
Sbjct 224021 GCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTC 223962
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| | | ||| ||||| | ||| | ||||||||| || |||||
Sbjct 223961 ACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTC 223902
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 223901 TTCACAAAGATTTGCATA 223884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507010736820960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |