Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq24 134 1e-26 seq12 113 5e-20 >seq24 Length=328731 Score = 134 bits (148), Expect = 1e-26 Identities = 343/509 (67%), Gaps = 21/509 (4%) Strand=Plus/Plus Query 50356 CGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTA-CTTTGGCCGA 50414 || ||||||| ||| ||||| | |||| | ||||||| || | | || || | Sbjct 173584 CGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAA-CTCATCGTTTGCTCA 173642 Query 50415 ACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCAT 50474 ||| || ||||| |||||| || || ||| | || ||| ||| |||||| |||| Sbjct 173643 ACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCAT 173702 Query 50475 ATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTT 50533 || | | || || | | ||| | ||||| ||| | || ||| |||||| | |||| Sbjct 173703 CTTCTGGCTCAAGAAGCGT-GGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTT 173761 Query 50534 CGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATG 50593 |||| || ||||| ||||||| |||||||| ||| | || || | || | | Sbjct 173762 CGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTC--CTGCACT-----CGCACCTC 173814 Query 50594 AAAAATTATCATACGAAACA----ATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAA 50649 ||||| | ||||| || | ||||| ||| || ||||||| ||||||| Sbjct 173815 AAAAACCGGGCCAGCAAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAA 173874 Query 50650 AAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATG 50709 |||| ||| | || || || | ||| ||||| | ||||||||||| | ||||| Sbjct 173875 CAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCTACCTTGATG 173934 Query 50710 TGCGAGTACATTGAGTTTGTTGCAGACAG-ATTGTTGTTGCAGCTGGGACAACCGAAATA 50768 |||| || ||||| ||||| ||| | || | || ||| ||||| ||| ||||| Sbjct 173935 AAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CTGGG-CAA-CGAAAAG 173991 Query 50769 CTATAATGCACGT--AACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACA 50826 | || | ||| || |||||| || ||| | ||||||||| | | ||||||||| Sbjct 173992 ATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAAACC 174051 Query 50827 AACTTTTTCGAAAGACGTGTAGGCGAATA 50855 ||||||||||||| || || || || || Sbjct 174052 AACTTTTTCGAAAAGCGGGTTGGTGACTA 174080 >seq12 Length=470578 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCAT 143051 |||||| || || ||||||||||||| || | || | ||||| |||||||| || ||| Sbjct 224304 TTCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCA-TCTTCCAGTTGTTTTCCGGCAA 224246 Query 143052 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCT 143111 | || || || || || ||||| || |||||||| ||||| ||||| || | | Sbjct 224245 ATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACAT 224186 Query 143112 GTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTA 143171 || | ||| |||| | ||| ||||| | ||| | |||||| || ||||| || || | Sbjct 224185 TGTCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGA 224126 Query 143172 CGAATATTTGCATA 143185 |||||||||||||| Sbjct 224125 CGAATATTTGCATA 224112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||||||| || || | || || || || || ||| Sbjct 224081 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCA 224022 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| || || ||||| || || || || || ||||| ||||| || Sbjct 224021 GCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTC 223962 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| ||||| | ||| | ||||||||| || ||||| Sbjct 223961 ACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTC 223902 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 223901 TTCACAAAGATTTGCATA 223884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507010736820960