Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq69 165 1e-35 seq24 165 1e-35 >seq69 Length=174959 Score = 165 bits (182), Expect = 1e-35 Identities = 337/490 (69%), Gaps = 13/490 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT-TGGCACGCGGA 96934 ||||||||||| || |||||||| || | ||| | ||| |||| || ||||| || || Sbjct 173299 CAGGGCGGCAACAAGCGGCCAGGTGCCTTTGCCATATACCTGGAGCCAATGGCATGCTGA 173240 Query 96935 CGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGA 96994 || ||||| ||| | || ||||||| ||| |||| || |||| ||||| | || Sbjct 173239 TGTCTTTGAGTTTCTGGATTTGCGCAAGAACCATGGCAAGGAGGAGGTTCGAGCTCGCGA 173180 Query 96995 CTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGG 97051 | | || | || || ||| | || || |||||||||||||||| || |||||| Sbjct 173179 CCTCTTCTTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGAAAAACGGTG- 173121 Query 97052 CTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 | |||| || ||||||||| || | ||||||||| |||| |||| ||||| || Sbjct 173120 --ATTGGACGCTCATGTGCCCCAACGAATGTCCCGGTCTGGCCGACTGCTACGGCGATGA 173063 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATG 97170 |||||||| |||| ||||||| |||||||| || ||||| || | Sbjct 173062 ATTTGAGGCTCTGTACGAAAAGTACGAGCGCGAGGGCCGTGGCCGCAAGACG-GTGCGGG 173004 Query 97171 CACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | | |||| |||||| | | ||| || | ||| || || || | |||| ||| Sbjct 173003 CTC-AGAAGCTGTGGTATTCTATCCTGGAAGTACAGACGGAAACGGGCAACCCGTTCATG 172945 Query 97230 CTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGG 97288 || ||||||||| | || || ||||| ||||| ||| || |||||||||| | | Sbjct 172944 CTGTACAAGGAT-CATTGCAACCGCAAGAGCAATCAAAAGAACCTGGGCACCATTCGGAG 172886 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGT 97348 || || || ||||||||||| || |||||| | | || || || || || ||| Sbjct 172885 TTCGAACCTTTGCACGGAAATCGTTGAGTACTCTGCACCTGATGAAGTTGCTGTCTGCAA 172826 Query 97349 TCTGGCATCG 97358 |||||| ||| Sbjct 172825 TCTGGCCTCG 172816 >seq24 Length=328731 Score = 165 bits (182), Expect = 1e-35 Identities = 347/506 (69%), Gaps = 31/506 (6%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || |||||||| | |||| || || |||||| | ||| | || || |||| || Sbjct 173581 ATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCATCGTTTGCT 173640 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | ||||||| || ||||| || ||||| ||||||||| ||| ||||| || Sbjct 173641 CAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCC 173700 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| |||||||||||||| || |||||||| || |||| ||||| | || Sbjct 173701 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATT 173760 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG-TTTCGCAACTATCTGCG 125599 || ||||| || || | ||| |||||||| ||| ||| ||||| || Sbjct 173761 TCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTCCTGCACTCGCACCT------- 173813 Query 125600 TCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAG 125656 | | | | ||||| || |||||||| |||| | ||||||||||| Sbjct 173814 ---CAAAAACCGGGCCAGC---AAACAGGTCATCTATGACATCATCACCGATGCCGTCGC 173867 Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA-TTGGCATGAACTGCA 125715 || |||||||| |||||||||||| |||| || | |||| | ||||||||||| || Sbjct 173868 CATCGAACAAGAATTTCTAACCGAAGCCCTGCC-CTGCGCATTACTTGGCATGAAC-GCT 173925 Query 125716 AGC-TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC 125774 | | | ||| |||| || ||||| || || || || || || || || ||| Sbjct 173926 ACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCACTG---GGC 173982 Query 125775 --CG-CAAGATTTACA--ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 || ||||| |||| || || |||||||||||||||||| | |||||| |||| Sbjct 173983 AACGAAAAGATGTACAGGTCGTCA--AATCCCTTTGATTTCATGGAAAACATATCGCTAG 174040 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| || |||||||||||||| ||| Sbjct 174041 GGGGCAAAACCAACTTTTTCGAAAAG 174066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053845847280