Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq70 113 4e-20 seq12 102 7e-17 >seq70 Length=137430 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||||| ||| ||||| || | |||||| ||||||| || | | Sbjct 82967 CGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCA 82908 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 82907 TCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 82848 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || | ||||||| | ||| ||||||| || || |||| ||||| Sbjct 82847 TCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATT 82788 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| |||||||||||||| Sbjct 82787 GTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 82753 >seq12 Length=470578 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| |||| || | || | ||||| ||||| || | ||| | Sbjct 223891 TTTGCATACCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGT 223832 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || || || |||||||| |||||||||| ||||||| || | ||| |||| Sbjct 223831 AGTCGGACAAGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGAT 223772 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||||||||| || ||||| | || || | ||||||| | | ||||| || | Sbjct 223771 CGGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCAATAGTGTTAGAGG 223712 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || || | ||||| || |||||||| Sbjct 223711 ACTCTACCTCTAGGGTGATCGTCTTTCCAGT 223681 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| || | || | |||||| || || || || || | ||| | Sbjct 224119 TTTGCATACCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGT 224060 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| || ||| | |||||| ||||| || || ||||||| | | || |||| Sbjct 224059 AATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGAT 224000 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || |||||||| || ||||| | ||||| | ||| || ||| ||||| | Sbjct 223999 CAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACG 223940 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||| || || ||||| | || ||||||||||| ||||| Sbjct 223939 ATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287961096080