Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq24 129 7e-25
>seq24
Length=328731
Score = 129 bits (142), Expect = 7e-25
Identities = 228/332 (69%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585
|| || || ||||| ||||||||| | | | | | || || | ||| |||||||||
Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445
Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645
| || || | || || || ||||| || || ||||||||||||||||| ||
Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385
Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705
| ||||||| ||||| || || | || || || |||| |||||||| || ||
Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325
Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33765
||||| ||| || ||||| |||| | || | |||||| |||||||| |
Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265
Query 33766 A---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822
| | || ||||| |||| | || || || | ||||| ||| || |||||||||||
Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205
Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
|| ||||||||||| || ||||| | ||| ||
Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173
Score = 116 bits (128), Expect = 5e-21
Identities = 290/439 (66%), Gaps = 10/439 (2%)
Strand=Plus/Minus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
|| || || ||||| || || ||||||||||| || ||||| || | | ||||| |||
Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
|||||||||||||| ||||| | | || || |||| |||| | | |
Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCAGTGCGACGAGA 173967
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
| | || || ||||| || ||||| ||||||| | ||||| || | | |
Sbjct 173966 AGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAAT 173907
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT- 33251
|| || || | || |||||||||||||| |||| || ||||| || || ||
Sbjct 173906 GCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATG 173847
Query 33252 ----AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 33307
|||| | | |||| | | |||| || | || || | |||||
Sbjct 173846 TCATAGATG-ACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTG----CAGGAGACATG 173792
Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367
| || || ||||| ||| || |||| ||| |||||||||||||| || | || |
Sbjct 173791 CAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAG 173732
Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427
|||| ||||||||||| || ||||| || ||||| || || | ||| ||||||||| |
Sbjct 173731 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATAC 173672
Query 33428 CTTCTACTGCAGCAAAGGC 33446
| || || || ||||||||
Sbjct 173671 CCTCGACCGCGGCAAAGGC 173653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622942699206480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |