Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24 129 7e-25 >seq24 Length=328731 Score = 129 bits (142), Expect = 7e-25 Identities = 228/332 (69%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 || || || ||||| ||||||||| | | | | | || || | ||| ||||||||| Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645 | || || | || || || ||||| || || ||||||||||||||||| || Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385 Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705 | ||||||| ||||| || || | || || || |||| |||||||| || || Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325 Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33765 ||||| ||| || ||||| |||| | || | |||||| |||||||| | Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265 Query 33766 A---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | | || ||||| |||| | || || || | ||||| ||| || ||||||||||| Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 || ||||||||||| || ||||| | ||| || Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Score = 116 bits (128), Expect = 5e-21 Identities = 290/439 (66%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || ||||| || || ||||||||||| || ||||| || | | ||||| ||| Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||||||||| ||||| | | || || |||| |||| | | | Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCAGTGCGACGAGA 173967 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | | || || ||||| || ||||| ||||||| | ||||| || | | | Sbjct 173966 AGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAAT 173907 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT- 33251 || || || | || |||||||||||||| |||| || ||||| || || || Sbjct 173906 GCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATG 173847 Query 33252 ----AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 33307 |||| | | |||| | | |||| || | || || | ||||| Sbjct 173846 TCATAGATG-ACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTG----CAGGAGACATG 173792 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 | || || ||||| ||| || |||| ||| |||||||||||||| || | || | Sbjct 173791 CAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAG 173732 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 |||| ||||||||||| || ||||| || ||||| || || | ||| ||||||||| | Sbjct 173731 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATAC 173672 Query 33428 CTTCTACTGCAGCAAAGGC 33446 | || || || |||||||| Sbjct 173671 CCTCGACCGCGGCAAAGGC 173653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942699206480