Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq24 127 2e-24 seq12 86.0 6e-12 seq70 82.4 7e-11 >seq24 Length=328731 Score = 127 bits (140), Expect = 2e-24 Identities = 347/521 (67%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | ||||| || |||||||||| || |||||| | || | | | | Sbjct 173575 CCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCATCG 173634 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 || || | || ||||||||||||| || ||||| |||| ||| ||| ||| Sbjct 173635 TTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTT 173694 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 ||| ||||||| | |||| | ||| ||||||| ||| |||| ||| |||||| Sbjct 173695 GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAA 173754 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGC 46326 || || ||||| || || || |||| ||||||||||| |||||| || ||||||| Sbjct 173755 CTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTC--CT---GCACTCGC 173809 Query 46327 GTGCACGACAAGCTTGCGCCCG-ACACCGTGC-----TGAGCATGTTCAAGGAGGCGGTG 46380 | | | || | | ||| | | || | | ||| ||| ||| || || || Sbjct 173810 -ACCTCAAAAACC--GGGCCAGCAAACAGGTCATCTATGA-CATCATCACCGATGCCGTC 173865 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 ||||| || | || ||| | || | || |||||| || | || ||||||||||| Sbjct 173866 GCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCT 173925 Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCACCA 46499 | ||| | || |||||||| || || ||||| || ||||| ||| | || Sbjct 173926 ACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA--CTGGGCA 173983 Query 46500 GCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 | || || | || | || ||||| ||||| || ||| | ||||| || || | || Sbjct 173984 ACGAAAAGATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGG 174043 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 ||||||| || |||||||||||||| || || || ||| || Sbjct 174044 GCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTATCAG 174084 >seq12 Length=470578 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||||||| || || | || | || ||||| || || |||||||||||| | Sbjct 224111 CCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGAC 224052 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| || |||| | ||||| || || || || Sbjct 224051 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGA 223992 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||||||| ||| | | || | || |||| || |||| Sbjct 223991 ATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACT 223932 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || |||| || || || || || ||||| Sbjct 223931 TCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || |||||||| ||||| || | ||||| || |||||||| ||||||||||| ||| | Sbjct 223883 CCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 223824 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | ||||| | ||| || || || |||| || || || || || ||||| Sbjct 223823 AAGGTCCTGCCA-TCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGG 223765 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 223764 AATACCCTCCTTGTC 223750 >seq70 Length=137430 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||| || | || | || |||||| || ||||| || ||||| Sbjct 82980 GCCACCGCGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCT 82921 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || || || |||||||| || || |||| | ||||||||||| || || Sbjct 82920 CAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGG 82861 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || || | ||||| | Sbjct 82860 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 82801 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || ||||| || || |||||||| Sbjct 82800 CTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 82753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009389707520