Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq24 127 2e-24
seq12 86.0 6e-12
seq70 82.4 7e-11
>seq24
Length=328731
Score = 127 bits (140), Expect = 2e-24
Identities = 347/521 (67%), Gaps = 19/521 (4%)
Strand=Plus/Plus
Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146
|| ||| | ||||| || |||||||||| || |||||| | || | | | |
Sbjct 173575 CCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCATCG 173634
Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206
|| || | || ||||||||||||| || ||||| |||| ||| ||| |||
Sbjct 173635 TTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTT 173694
Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266
||| ||||||| | |||| | ||| ||||||| ||| |||| ||| ||||||
Sbjct 173695 GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAA 173754
Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGC 46326
|| || ||||| || || || |||| ||||||||||| |||||| || |||||||
Sbjct 173755 CTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTC--CT---GCACTCGC 173809
Query 46327 GTGCACGACAAGCTTGCGCCCG-ACACCGTGC-----TGAGCATGTTCAAGGAGGCGGTG 46380
| | | || | | ||| | | || | | ||| ||| ||| || || ||
Sbjct 173810 -ACCTCAAAAACC--GGGCCAGCAAACAGGTCATCTATGA-CATCATCACCGATGCCGTC 173865
Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440
||||| || | || ||| | || | || |||||| || | || |||||||||||
Sbjct 173866 GCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCT 173925
Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCACCA 46499
| ||| | || |||||||| || || ||||| || ||||| ||| | ||
Sbjct 173926 ACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA--CTGGGCA 173983
Query 46500 GCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558
| || || | || | || ||||| ||||| || ||| | ||||| || || | ||
Sbjct 173984 ACGAAAAGATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGG 174043
Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599
||||||| || |||||||||||||| || || || ||| ||
Sbjct 174044 GCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTATCAG 174084
>seq12
Length=470578
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||||||||| || || | || | || ||||| || || |||||||||||| |
Sbjct 224111 CCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGAC 224052
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| ||||||||||| || |||| | ||||| || || || ||
Sbjct 224051 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGA 223992
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||||||| ||| | | || | || |||| || ||||
Sbjct 223991 ATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACT 223932
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | || || || |||| || || || || || |||||
Sbjct 223931 TCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| |||||||| ||||| || | ||||| || |||||||| ||||||||||| ||| |
Sbjct 223883 CCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 223824
Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||| | || | ||||| | ||| || || || |||| || || || || || |||||
Sbjct 223823 AAGGTCCTGCCA-TCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGG 223765
Query 131127 GATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 223764 AATACCCTCCTTGTC 223750
>seq70
Length=137430
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||||| ||||| || | || | || |||||| || ||||| || |||||
Sbjct 82980 GCCACCGCGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCT 82921
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||| || || || |||||||| || || |||| | ||||||||||| || ||
Sbjct 82920 CAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGG 82861
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| || || ||||| | || | || || | ||||| |
Sbjct 82860 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 82801
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | || || || || || ||||| || || ||||||||
Sbjct 82800 CTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 82753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472009389707520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |