Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq12 152 3e-32
seq68 140 2e-28
>seq12
Length=470578
Score = 152 bits (168), Expect = 3e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||||| ||| | || | |||||| || || |||||||||||||| |
Sbjct 224339 CCACCACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTC 224280
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | |||| | || || | |||||||||||||||||| ||||| ||||| |||| |||
Sbjct 224279 AGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGA 224220
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| ||||| ||||| ||||||||| | | ||||| | |||||||
Sbjct 224219 ATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACT 224160
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || || |||||||| || || |||||||| |||||
Sbjct 224159 TCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113
Score = 84.2 bits (92), Expect = 1e-11
Identities = 178/266 (67%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|||| || ||||||||||| ||| ||| || ||||| ||||||| ||||||||
Sbjct 243288 GACGTCTTTTACCGCTACAAGATGGAGCGTCTCCAAACCAAGATCGAGGGCAAGGGAAAT 243347
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || || || ||||| |||||| ||||| || ||| | |||| ||||| |
Sbjct 243348 GGCATCAAGACAGTCATCGTCAACTTGCCTAGTGTTGCTGCCTCACTCGCTCGCCCGCCT 243407
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
| || | || || ||||| | ||| | ||||| |||| | ||||| |||
Sbjct 243408 TCGTATATCAACAAGTACTTCGGCTTTGAATTGGGCGCCATGACGAACAATGATCCCAAG 243467
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
| || || | ||| | || || | ||| | || ||||| || |||||| || ||
Sbjct 243468 GATGATCGTTGGATCATCAATGGTGCTCATGAATCGGCCAAACTACAGGACCATCTCGAT 243527
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTG 6460
||||| || |||||||| || ||
Sbjct 243528 GGCTTCATCAATAAGTTTGTCCTTTG 243553
>seq68
Length=174617
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 44610 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 44551
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 44550 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 44516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944840506318
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |