Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq12 152 3e-32 seq68 140 2e-28 >seq12 Length=470578 Score = 152 bits (168), Expect = 3e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||| ||| | || | |||||| || || |||||||||||||| | Sbjct 224339 CCACCACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTC 224280 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| | || || | |||||||||||||||||| ||||| ||||| |||| ||| Sbjct 224279 AGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGA 224220 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| ||||| ||||||||| | | ||||| | ||||||| Sbjct 224219 ATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACT 224160 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || |||||||| || || |||||||| ||||| Sbjct 224159 TCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113 Score = 84.2 bits (92), Expect = 1e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 |||| || ||||||||||| ||| ||| || ||||| ||||||| |||||||| Sbjct 243288 GACGTCTTTTACCGCTACAAGATGGAGCGTCTCCAAACCAAGATCGAGGGCAAGGGAAAT 243347 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || || ||||| |||||| ||||| || ||| | |||| ||||| | Sbjct 243348 GGCATCAAGACAGTCATCGTCAACTTGCCTAGTGTTGCTGCCTCACTCGCTCGCCCGCCT 243407 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | || | || || ||||| | ||| | ||||| |||| | ||||| ||| Sbjct 243408 TCGTATATCAACAAGTACTTCGGCTTTGAATTGGGCGCCATGACGAACAATGATCCCAAG 243467 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 | || || | ||| | || || | ||| | || ||||| || |||||| || || Sbjct 243468 GATGATCGTTGGATCATCAATGGTGCTCATGAATCGGCCAAACTACAGGACCATCTCGAT 243527 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTG 6460 ||||| || |||||||| || || Sbjct 243528 GGCTTCATCAATAAGTTTGTCCTTTG 243553 >seq68 Length=174617 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 44610 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 44551 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 44550 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 44516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944840506318