Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq24 123 3e-23 >seq24 Length=328731 Score = 123 bits (136), Expect = 3e-23 Identities = 227/332 (68%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||||| |||||||| ||||||||| | | | | | || || | ||| ||||| ||| Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | || || | || || || ||||| || || || ||||||||||||||||| Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | ||||||| ||||| || || | || || || | || |||||||| || || Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 ||||| ||| || ||||| |||| | || | |||||| |||||||| | Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265 Query 33123 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | | || ||||| |||| | || || || | ||| | ||| || ||||||||||| Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 || ||||||||||| || ||||| | ||| || Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Score = 95.1 bits (104), Expect = 2e-14 Identities = 285/438 (65%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || || ||||| || || ||||||||||| || ||||| || ||| ||||| ||| Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||||||||| || ||||| | | || || |||| |||| | | | Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCAGTGCGACGAGA 173967 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | || || || || || ||||| ||||||| | ||||| || | | | Sbjct 173966 AGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAAT 173907 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT- 32608 || || || | || |||||||||||||| || | ||| || || || || || Sbjct 173906 GCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATG 173847 Query 32609 --AGATCTTAC-TGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 | | | || ||||| | | |||| | | || || | |||||| Sbjct 173846 TCATAGATGACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTG----CAGGAGACATGC 173791 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 || || ||| | ||| || |||| ||| | |||||||||||| || | || || Sbjct 173790 AAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAGG 173731 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785 ||| ||||||||||| || ||||| || ||||| ||||| | ||| |||||| || || Sbjct 173730 CATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATACC 173671 Query 32786 TTCTACTGCCGCAAAGGC 32803 || || || |||||||| Sbjct 173670 CTCGACCGCGGCAAAGGC 173653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627422008800