Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24 102 9e-17 >seq24 Length=328731 Score = 102 bits (112), Expect = 9e-17 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || |||||||| | || || || | || || |||| |||||||| ||| || Sbjct 173459 ATATAGGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGA 173400 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||||||||| || | || || | |||||| || || || | ||| || | Sbjct 173399 AATCCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAG 173340 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || || || || || || ||||| |||| || || | ||||| Sbjct 173339 TTTTCATTGACGATGCCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATAC 173280 Query 93542 TTCTCATCATCTTTAA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 || || ||||| || | | || | ||| || | || || || ||||| | ||| Sbjct 173279 TTTTCGTCATCATTCAGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCC 173220 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | |||||||| || || ||||| || |||||||| | ||| || Sbjct 173219 TCGGCTGTCCAAAATGAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| || || |||||||| ||||| || || | || ||| || || || Sbjct 173795 CATGCAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAG 173736 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||||||||| || || || ||||| |||| ||| || Sbjct 173735 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAG 173676 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270 ||||| || || || ||||| ||||| | |||| ||||| || | || | || Sbjct 173675 ATACCCTCGACCGCGGCAAAGGCCACCAAGCGTTGAGCAAACGATG-AGTTTTTGTCCTG 173617 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 |||||| || |||||| ||||| ||||| ||| ||||| Sbjct 173616 GATCCAGCGTATAGCCCAGTCGGCCTTTTTGCGAATGCAAGG 173575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856776680720