Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq12 154 1e-32
seq70 109 5e-19
seq14 100 2e-16
seq69 82.4 6e-11
>seq12
Length=470578
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || ||||| || || ||| ||||| | ||||| ||| | ||
Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || | || ||||| || ||||||||||||||||| || ||||||
Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAA 224004
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | |||||| ||| || | ||||||||||||
Sbjct 224005 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAAC 224064
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || ||||| ||||| | || | || | || |||||||| |||
Sbjct 224065 ATCCAGAAAGAGTCCACGTTGCACCTTGTCCTTCGTTTGCGCGGCGGT 224112
Score = 129 bits (142), Expect = 5e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||||||||| |||||||||||||| | || |||||||| |||
Sbjct 223741 AAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAACGCTTGATCTTTGCCGGAAAA 223800
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||||| |||||| | | ||| | ||||| ||||||||||| || || || || |||||
Sbjct 223801 CAGTTGGAGGATGGCAGGACCTTGTCCGACTACAACATTCAGAAGGAGTCTACACTACAT 223860
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || |||| |||||||| |||
Sbjct 223861 CTTGTCCTGCGCTTGCGCGGCGGT 223884
Score = 116 bits (128), Expect = 3e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||||| || || || ||| | ||| | ||||| ||| | |
Sbjct 224113 ATGCAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCG 224172
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| || | || ||||| ||||||||||| || ||||| ||||| |||
Sbjct 224173 GATACGATTGACAATGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCCCCCGACCAA 224232
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || ||||||||||| ||||| | || ||| || || | |||||||||
Sbjct 224233 CAGCGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACAAT 224292
Query 22399 ATTCAAAAAGAA 22410
||||| ||||||
Sbjct 224293 ATTCAGAAAGAA 224304
>seq70
Length=137430
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || ||||| ||||| | || || || || |||||||||| ||||| |
Sbjct 82750 AAGATGCAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCT 82809
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | ||| | |||| || ||||| ||||||||||| ||||| |||||
Sbjct 82810 TCTGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 82869
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || || |||||||| || ||| | || ||| ||| ||| | ||| ||
Sbjct 82870 CAGCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGCGACTAT 82929
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||| || || || ||| | || | || |||| ||||||| ||
Sbjct 82930 AACATACAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTGCGCGGTGG 82979
>seq14
Length=772799
Score = 100 bits (110), Expect = 2e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || |||| || ||||| |||| || || || || | | || || |
Sbjct 70029 TTTCGTCAAGACCCTAACGGGCAAAACCATCACCCTCGAGGTCGAGTCGTCGGAAACGAT 69970
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
|| | | ||| || ||||| || ||||||| |||||| || ||||||||||| ||
Sbjct 69969 CGATAACTTTAAATCCAAGATTCAGGATAAGGAGGTTATTCCTCCGGATCAACAACGACT 69910
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | || ||| ||| ||| | |||||||||||||| |||||
Sbjct 69909 GATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAA 69850
>seq69
Length=174959
Score = 82.4 bits (90), Expect = 6e-11
Identities = 108/150 (72%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 129699 CGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCA 129758
|||||||| ||||||||| ||| ||| | || |||||| || ||||| | |||
Sbjct 172816 CGAGGCCAGATTGCAGACAGCAACTTCATCAGGTGCAGAGTACTCAACGATTTCCGTGCA 172875
Query 129759 CAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATC 129818
| || | | ||||||||||| | ||||||||| || || ||||||| |||
Sbjct 172876 AAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAATGATC 172935
Query 129819 TTTGTACATCATGTACGGCGTGCCCGTTTC 129848
||||||| |||| |||| ||||||||||
Sbjct 172936 CTTGTACAGCATGAACGGGTTGCCCGTTTC 172965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725043278570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |