Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq70 167 4e-36 seq12 150 3e-31 seq14 143 5e-29 seq24 104 4e-17 >seq70 Length=137430 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| || ||| ||| || || |||||||| ||| Sbjct 82979 CCACCGCGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTC 82920 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || ||||| | || |||||||| ||| Sbjct 82919 AGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGA 82860 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| ||||||||||| | || || || Sbjct 82859 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 82800 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || |||||||| ||||| || |||||||| Sbjct 82799 TCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 82753 >seq12 Length=470578 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| |||| || | ||| | ||| ||||| || || || |||||| Sbjct 224340 TCCACCACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCT 224281 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | || || ||||| |||||||| | ||||||||||| || Sbjct 224280 CAGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGG 224221 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||||||||| || || | ||| || || || || || | ||||| || Sbjct 224220 AATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAAC 224161 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| | |||||||||||||| ||||| Sbjct 224160 TTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | || | || | ||| | |||||||||||| |||||||| |||||||| Sbjct 224111 CCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGAC 224052 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||||| || || ||| Sbjct 224051 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGA 223992 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || | ||| || ||||||||||| | ||||| ||| Sbjct 223991 ATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACT 223932 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | ||||| || || || ||||| Sbjct 223931 TCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885 >seq14 Length=772799 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| |||||||| || || | |||||||| | |||||| |||||||| || Sbjct 69850 TTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATC 69909 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||| || || ||||| | ||||| || |||||||| | || | | ||| Sbjct 69910 AGTCGTTGTTGATCCGGAGGAATAACCTCCTTATCCTGAATCTTGGATTTAAAGTTATCG 69969 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || || || | || || || || | |||||||||||| ||||| |||||||||||||| Sbjct 69970 ATCGTTTCCGACGACTCGACCTCGAGGGTGATGGTTTTGCCCGTTAGGGTCTTGACGAA 70028 >seq24 Length=328731 Score = 104 bits (114), Expect = 4e-17 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || |||||||| || || ||||| ||||| ||||||| |||||| | Sbjct 174099 CATGACACCGGCCTTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCC 174040 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||| |||||||| || | | || ||| || || Sbjct 174039 TAGCGATATGTTTTCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCC 173980 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||||| || || |||||| || ||||||||||| ||||| |||||| | | ||| Sbjct 173979 CAGTGCGACGAGAAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTT 173920 Query 10115 CATGCCAA-TCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||||||| | |||| |||||| | ||| ||| | || || | |||| ||||||| | Sbjct 173919 CATGCCAAGTAATGC-GCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGG 173861 Query 10174 CTTC 10177 | || Sbjct 173860 CATC 173857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921615741278160