Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq70 167 4e-36
seq12 150 3e-31
seq14 143 5e-29
seq24 104 4e-17
>seq70
Length=137430
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||||| || | ||| || ||| ||| || || |||||||| |||
Sbjct 82979 CCACCGCGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTC 82920
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| ||||| || ||||| | || |||||||| |||
Sbjct 82919 AGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGA 82860
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| ||||||||||| | || || ||
Sbjct 82859 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 82800
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || || || |||||||| ||||| || ||||||||
Sbjct 82799 TCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 82753
>seq12
Length=470578
Score = 150 bits (166), Expect = 3e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || ||||| |||| || | ||| | ||| ||||| || || || ||||||
Sbjct 224340 TCCACCACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCT 224281
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | |||||||| | || || ||||| |||||||| | ||||||||||| ||
Sbjct 224280 CAGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGG 224221
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|||||||||||||||||| || || | ||| || || || || || | ||||| ||
Sbjct 224220 AATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAAC 224161
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || |||||||| | |||||||||||||| |||||
Sbjct 224160 TTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| | || | || | ||| | |||||||||||| |||||||| ||||||||
Sbjct 224111 CCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGAC 224052
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | ||||| || || |||
Sbjct 224051 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGA 223992
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || || || | ||| || ||||||||||| | ||||| |||
Sbjct 223991 ATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACT 223932
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || || || || | ||||| || || || |||||
Sbjct 223931 TCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885
>seq14
Length=772799
Score = 143 bits (158), Expect = 5e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
||||||||||| |||||||| || || | |||||||| | |||||| |||||||| ||
Sbjct 69850 TTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATC 69909
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|||| |||||| || || ||||| | ||||| || |||||||| | || | | |||
Sbjct 69910 AGTCGTTGTTGATCCGGAGGAATAACCTCCTTATCCTGAATCTTGGATTTAAAGTTATCG 69969
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| || || | || || || || | |||||||||||| ||||| ||||||||||||||
Sbjct 69970 ATCGTTTCCGACGACTCGACCTCGAGGGTGATGGTTTTGCCCGTTAGGGTCTTGACGAA 70028
>seq24
Length=328731
Score = 104 bits (114), Expect = 4e-17
Identities = 171/244 (70%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || |||||||| || || ||||| ||||| ||||||| |||||| |
Sbjct 174099 CATGACACCGGCCTTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCC 174040
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||| |||||||| || | | || ||| || ||
Sbjct 174039 TAGCGATATGTTTTCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCC 173980
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||||| || || |||||| || ||||||||||| ||||| |||||| | | |||
Sbjct 173979 CAGTGCGACGAGAAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTT 173920
Query 10115 CATGCCAA-TCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173
|||||||| | |||| |||||| | ||| ||| | || || | |||| ||||||| |
Sbjct 173919 CATGCCAAGTAATGC-GCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGG 173861
Query 10174 CTTC 10177
| ||
Sbjct 173860 CATC 173857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921615741278160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |