Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq69 309 6e-79 seq24 140 6e-28 >seq69 Length=174959 Score = 309 bits (342), Expect = 6e-79 Identities = 1011/1546 (65%), Gaps = 70/1546 (5%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| |||||||| ||||| |||| ||| ||||| |||||||||| |||| || || Sbjct 172243 GTTGACCACCTGGAACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGG 172302 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| ||||||| || || |||| |||||| || |||||||| || | ||| Sbjct 172303 CTCGAAGCACTCGTTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCAC 172362 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||||||||| | | ||| | | || ||| | | |||| | ||| ||||| Sbjct 172363 CAGCAGACTGTTGCGTATGCCATACTCCTTGATCTGCTCCCGGAGCGTTTCCCACTCCCA 172422 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | || ||| | || | || |||||| |||||||| |||| |||| | Sbjct 172423 GAGCTCTGA-AGG-CTTCACCTT-------CCACATATCAAACTGGAGCACGCCCT--CC 172471 Query 244330 GACGGGGCTG--CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386 |||| | | || | | | || |||||| || |||| || ||||||| | | Sbjct 172472 GACGCAGGCGATCCTTTAAACGACGAGTAGGGCCCTTCGCTCTTTGCCAGCTCCATTGAG 172531 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 ||| | | |||||| ||||||||||||||| || ||| ||| | || ||||||| Sbjct 172532 GCAGTCAACG-CGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTTAGCTCCCGGGCCT- 172589 Query 244447 GCCGCAGGTG--AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 ||| || || || |||| | || || | || ||||| ||||| || || Sbjct 172590 -CCGGAGACTCAAACGGCATGCGGAGAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCA 172648 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | || || |||| ||| ||| ||||| | ||| || || |||||| |||| Sbjct 172649 ACACCAATCGGTCGGTGGCGCATGTTGCTGTTTTGGGCCTCTTCAACTGGGTAATGGTTG 172708 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCT 244622 ||||||| | | | |||||||| ||| || | |||| || ||| ||| || Sbjct 172709 ACGTCGATGATCCTATTGAGGTTACGGACGACGACCTGCGTC--ACCTCGTGGAGCTTCT 172766 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCG 244681 | |||||||| | || |||| || || || || | ||||| Sbjct 172767 GGAAGTCGTAG-------------CAGCCCTGGTCATAGTCGACGAAGGCAGGCAGGGCT 172813 Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG--GTGTACTGGACAATCTCGG 244739 | |||||| |||||||| || || || || || || | ||||| || || || | Sbjct 172814 AGCGAGGCCAGATTGCAGACAGCAACTTCATC--AGGTGCAGAGTACTCAACGATTTCCG 172871 Query 244740 TGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGG 244799 |||| ||||| | | ||||||||||||| || |||||| |||| |||||| Sbjct 172872 TGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAAT 172931 Query 244800 CGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCC 244859 |||||||| |||||||| || || || || ||| | | |||| | || Sbjct 172932 GATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACC 172991 Query 244860 AGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACA 244919 | || | | |||| |||||| |||| | |||||| |||||| ||||| Sbjct 172992 ACAGCTTCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACA 173051 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACAT 244977 | ||||| || || ||| || ||| | || ||||| || || | |||||||| Sbjct 173052 GAGCCTCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTG--GGGCACAT 173109 Query 244978 GAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 ||| |||| || ||| | || || | || |||||| |||||||| ||||| ||||| Sbjct 173110 GAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGC 173169 Query 245038 CTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAA 245097 ||||||||| | | | ||| ||| |||| |||||| | || |||| ||| Sbjct 173170 TAAGAAGAGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAAA 173229 Query 245098 GTCAAAGACGTCGACGTGCCA-GGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 |||||||| || | ||||| ||||||| ||| | || | ||| || |||||||||| Sbjct 173230 CTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGT 173289 Query 245157 TGCCTCCCTGGTCCACCATCCTCTCGAG-CGCGTTG---AAGATGCGCAGGGTAGGCACT 245212 |||| |||||||| | | | || | || |||| |||| || || | || | Sbjct 173290 TGCCGCCCTGGTCGA----CGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATG 173345 Query 245213 ATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG 245272 | ||||| ||| ||||||||||| ||| | | ||| | | | || | | Sbjct 173346 ACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGA----TCCG 173401 Query 245273 ATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGT 245328 ||| || | || | || ||||| ||| ||||| | |||||| |||||| || Sbjct 173402 ATGCACGTTGAGCCCGATGCCACCGGCCATCTTAGAGATCATGGCGCACGTCTTGAGCGT 173461 Query 245329 GTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG 245388 ||| |||||||| |||||||| |||||||| | || ||||| |||||||| || Sbjct 173462 GTCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTG 173521 Query 245389 GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC-GGCTCG 245447 | || || ||| | ||||||||| | || || ||||| ||| ||| ||| | Sbjct 173522 GCACTGAGGCGTGCCAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAG-AGCTTGCTGG 173580 Query 245448 AGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC 245507 | | || |||||| | ||| | |||||| |||||||| || || ||| Sbjct 173581 ACATGAGGTTGTACGTTTCGAGGACTCGGTCGATATTGTCGCCCCATATACCCACGGCAA 173640 Query 245508 ACCTCATGAGGGTGTGCT-GGGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | ||||| |||| | |||||| || |||| || ||| | ||| |||| | Sbjct 173641 CGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCGAG---CTTCAGCAGAT 173697 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 | || ||||| || |||||||| ||||| ||| ||| |||||| Sbjct 173698 AAGAACGCTCCAGAGTCTTGAAGCCAAAATACTGATAGTTAAAGTC 173743 >seq24 Length=328731 Score = 140 bits (154), Expect = 6e-28 Identities = 302/443 (68%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| |||||||| |||||||| || ||||| ||||||||||||| Sbjct 173648 TGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCATCTTCT 173707 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || || || ||||| || | ||||| || ||||||||||| | Sbjct 173708 GGCTCAAGAAGCGTGGCCTC-ATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGA 173766 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 || || || |||| | ||||||||| || |||||| |||| ||||||| || | Sbjct 173767 GATGAAGGTTTGCACACGGACTTTGCATGTCTCCTGCACTCG---CACCTCAAAAACCGG 173823 Query 42885 CCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || || || || | ||||||||| || ||||| | ||||| | || || Sbjct 173824 GCCAGCAAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAACAAGAATTT 173883 Query 42945 CTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACC-TCATGTGCAAGTA 43003 || || | | |||||| | | | |||||||| | | ||| | ||| |||| Sbjct 173884 CTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAA-CGCTACCTTGATGAAGCAGTA 173942 Query 43004 CATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACA 43062 ||| ||| ||| ||||||| || || || || |||| | | |||| Sbjct 173943 TATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CTGGGCAACGAAAAGATGTACAGGT 174001 Query 43063 CGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCG 43122 || | ||||| || || ||||| ||||| ||| | | |||||| ||||||||||||| Sbjct 174002 CGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAAACCAACTTTTTCG 174061 Query 43123 AGAAGCGCGTCGCCGACTACCAG 43145 | ||||| || | ||||| ||| Sbjct 174062 AAAAGCGGGTTGGTGACTATCAG 174084 Score = 113 bits (124), Expect = 9e-20 Identities = 177/250 (71%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| ||||| |||||||| || || || |||||||| Sbjct 173182 ATGTACAAGAAGGCAGAGGCCTCATTTTGGACAGCCGAGGAAATAGATCTCTCCAAGGAC 173241 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | | |||| | || | |||| || ||||||||| ||| | |||| || Sbjct 173242 TTGCATGACTGGAACA-ACCGCCTGAATGATGACGAAAAGTATTTTGTGTCCCACATCCT 173300 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 |||||| ||||||||||| |||||||| |||||||| ||| ||| |||||| Sbjct 173301 GGCCTTTTTCGCCGCCTCGGACGGCATCGTCAATGAAAACTTGGTTGAGCGGTTCAGCGG 173360 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| | ||||| || ||||||||||| || ||||| || |||||| | Sbjct 173361 CGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATTATGATGGAGAACAT 173420 Query 42545 GCACTCTGAG 42554 ||||| ||| Sbjct 173421 CCACTCCGAG 173430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332377149280