Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq69 212 6e-50
seq24 138 1e-27
seq70 96.9 3e-15
seq12 84.2 2e-11
>seq69
Length=174959
Score = 212 bits (234), Expect = 6e-50
Identities = 996/1555 (64%), Gaps = 54/1555 (3%)
Strand=Plus/Plus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
|||||||||| || ||||||||||||| || |||| | || | ||| ||| |||
Sbjct 172242 GGTTGACCACCTGGAACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAG 172301
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| | ||||| ||||| || ||||| | |||| | || |||||||| ||||
Sbjct 172302 GCTCGAAGCACTCGTTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCA 172361
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
||| || | || || | ||| | | | || | ||| | || | ||| ||||
Sbjct 172362 CCAGCAGACTGTTGCGTATGCCATACTCCTTGATCTGCTCCCGGAGCGTTTCCCACTCCC 172421
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCGGG 153265
| ||| | || || || | |||||||| || |||| | ||| || |||| || ||
Sbjct 172422 AGAGCTCTGAAGGCTTCACCTTCCACATATCAAACTGGAGCACGCCCTCCGAC--GCAGG 172479
Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCC--TCG 153323
|| ||||| |||| || |||| | ||||| || || || | ||
Sbjct 172480 CGATCCTTTAAACGACGAGTAGGGCCCTTCGCTCTTTGCCAGCTC-CATTGAGGCAGTCA 172538
Query 153324 AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCT- 153382
| |||| | | ||| ||||| ||| |||| | || || | ||| || ||
Sbjct 172539 A-CGCGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTTAGCTC--CCGGGCCTCCGGAG 172595
Query 153383 -CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441
||| |||||||||| || || ||| || || ||||| ||||||| ||| || || |
Sbjct 172596 ACTCAAACGGCATGCGGAGAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCAA 172655
Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGGGATAGTGATTGCGATCG 153500
| ||||| || | ||||||| || ||| | | || || || ||| |||
Sbjct 172656 TCGGTCGGTGGCGCATGTTGCTGTTTTGGGC-CTCTTCAACTGGGTAATGGTTGACGTCG 172714
Query 153501 ATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCA 153560
|| || | |||||||| || || || || | || | | | | || |||| ||| ||
Sbjct 172715 ATGATCCTATTGAGGTTACGGACGACGACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCG 172774
Query 153561 TAG--------GTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGAT 153612
||| ||||| ||||||| | ||| || ||| | || |||||||
Sbjct 172775 TAGCAGCCCTGGTCATA--GTCGACGA--AGGCAGG----CAGGGCTAGCGAGGCCAGAT 172826
Query 153613 TACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGC 153672
| ||||| || || || | | ||||| ||||| || | ||| ||||| |
Sbjct 172827 TGCAGACAGCAACTTCATCAGGTGCAGAGTACTCAACGATTTCCGTGCAAAGGTTCGAAC 172886
Query 153673 ATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCA 153732
||| ||||| || | |||||||| ||||| ||||| || ||| | ||||
Sbjct 172887 TCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAATGATCCTTGTACAGCA 172946
Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTC 153792
|| |||| ||| || || || ||| | |||| | ||| | ||| || |
Sbjct 172947 TGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACCACAGCTTCTGAGCCC 173006
Query 153793 GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852
||||| || || |||||||||| |||||| |||||||| |||||| || |
Sbjct 173007 GCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCAT 173066
Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912
|||||||||||||||| || |||||||| | | || ||||| |||| ||| | |||
Sbjct 173067 CGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCGTCCAATCACCGT 173126
Query 153913 CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972
| ||||| ||||||||| || || | ||| || || | | ||||||||| |
Sbjct 173127 TTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGAG 173186
Query 153973 CCTTGCA-ATCCTCCGCGCCCATG----TTGCGTTTCAGATTGAGCACGCTATAGATGTC 154027
|| | | |||||| | ||||| ||||| || || || | | ||| ||
Sbjct 173187 -CTCGAACCTCCTCCTTG-CCATGGTTCTTGCG---CAAATCCAGAAACTCAAAGACATC 173241
Query 154028 GGCGTGCCA-GGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGAT 154083
|| ||||| || || | ||| | ||| | ||||||| ||| || |||||||| |
Sbjct 173242 AGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGT 173301
Query 154084 CGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGC 154143
|||||| ||| || | ||||| ||||| || | |||||| | ||| | | ||| |
Sbjct 173302 CGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTCC 173361
Query 154144 CGTTGGT---CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAA 154200
||||||| | | || | | |||| || || | |||||||||| | || |
Sbjct 173362 CGTTGGTGCCGGCAATG--CAAG-AGCCGGTAGCACGGATCCGATGCACGTTGAGCCCGA 173418
Query 154201 TGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCG 154259
|||| ||| | ||| || || ||||| ||| ||||| ||| ||||| |||
Sbjct 173419 TGCCACCGGCCATCTTAGAGATCATGGCGCACGTC-TTGAGCGTGTCGTAAATGCCCTCG 173477
Query 154260 ATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCC 154318
||||| || || | | | | | ||| ||||| ||| ||| | | || |||| ||
Sbjct 173478 ATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTG-GCACTGAGGCGTGCC 173536
Query 154319 CGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGT 154378
|| || || | || ||| || || || || || | ||| | | ||||||
Sbjct 173537 AGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTACGT 173596
Query 154379 TTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTG 154438
||||| | | ||||||| ||||| || || | || |||||||||| ||||||
Sbjct 173597 TTCGAGGACTCGGTCGATATTGTCGCCCCATATACCCACGGCAACGCGCATGATCATGTG 173656
Query 154439 CTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTT 154498
|| || || || ||| | ||| | ||||| ||||| | || || || ||
Sbjct 173657 TTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCAGATAAGAACGCTCCAGAGTCTT 173716
Query 154499 GTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553
| | || ||||||| || | ||| || | |||| |||||||| |||||||
Sbjct 173717 GAAGCCAAAATACTGATAGTTAAAGTCCCGGTCATAGATGATGGCCGAATCGAGC 173771
>seq24
Length=328731
Score = 138 bits (152), Expect = 1e-27
Identities = 353/524 (67%), Gaps = 19/524 (4%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| ||||||||||||| | ||||| || |||||| || | | | | |
Sbjct 173572 GTTCCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCA 173631
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445
|| | || | ||| |||||||||| ||| |||||||| | || ||| || |
Sbjct 173632 TCGTTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCC 173691
Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505
|||||| ||||||| | | || | | ||| | ||||| ||| |||| || ||||
Sbjct 173692 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAAC 173751
Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565
|| | || ||||| || ||||| |||||||||||||||| || ||| || | ||
Sbjct 173752 GAACTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATG--TCTCCTGC---ACT 173806
Query 52566 CGCGTGACC-GAAAAATTGGATTCGGACAC-GATC--CTGAG-CATGTTCAAGGAGGCGG 52620
||| ||| ||||| || | | || | || || | ||| ||| || || |
Sbjct 173807 CGC---ACCTCAAAAACCGGGCCAGCAAACAGGTCATCTATGACATCATCACCGATGCCG 173863
Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680
| || |||||| | || ||| | || | || ||||| || | || ||||||||||
Sbjct 173864 TCGCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACG 173923
Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGGG 52739
| | ||| |||| |||||||| || || || || || | || ||| || |||
Sbjct 173924 CTACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CT-GGG 173981
Query 52740 CAGCCAAAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797
|| | ||| | | | | ||| ||||| ||||| || ||| | ||||| ||||| |
Sbjct 173982 CAACGAAAAGA-TGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAG 174040
Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
|||||| |||||||||||||| ||||| || || || ||| ||
Sbjct 174041 GGGGCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTATCAG 174084
>seq70
Length=137430
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || ||||| |||||||||| || || || ||||| || || |||| | |
Sbjct 82944 CTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAA 82885
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
||| || ||||| ||||| || || || || || ||||| ||| | || | || | |
Sbjct 82884 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGT 82826
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
||| | | |||||| | ||||||||||| | || | || || || || || |||||
Sbjct 82825 TGT-CGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTG 82767
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 82766 ACAAAGATCTGCAT 82753
>seq12
Length=470578
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| ||||| |||| || | ||||| | |||||||| ||||||||||||||| |
Sbjct 223883 CCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 223824
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || | || | ||||| | ||||| |||| | |||| | || ||||| || |||||
Sbjct 223823 AAGGTCCTGCCA-TCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGG 223765
Query 138507 TATACCTTCTTTGTC 138521
||||| || |||||
Sbjct 223764 AATACCCTCCTTGTC 223750
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483
|| || ||||| ||||| ||||||| |||||| || || |||||||| |||| | |
Sbjct 224303 TCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAAT 224244
Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTG 138542
|| || ||||||||||| || || || ||||| ||||| ||||| || | ||||
Sbjct 224243 ATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTG 224184
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | || || | || || || || | || | ||| || || |||| ||| || ||
Sbjct 224183 -TCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGAC 224125
Query 138603 AAAAATCTGCAT 138614
|| || |||||
Sbjct 224124 GAATATTTGCAT 224113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258814504160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |