Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq69 212 6e-50 seq24 138 1e-27 seq70 96.9 3e-15 seq12 84.2 2e-11 >seq69 Length=174959 Score = 212 bits (234), Expect = 6e-50 Identities = 996/1555 (64%), Gaps = 54/1555 (3%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||||||||| || ||||||||||||| || |||| | || | ||| ||| ||| Sbjct 172242 GGTTGACCACCTGGAACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAG 172301 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| || ||||| | |||| | || |||||||| |||| Sbjct 172302 GCTCGAAGCACTCGTTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCA 172361 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 ||| || | || || | ||| | | | || | ||| | || | ||| |||| Sbjct 172362 CCAGCAGACTGTTGCGTATGCCATACTCCTTGATCTGCTCCCGGAGCGTTTCCCACTCCC 172421 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCGGG 153265 | ||| | || || || | |||||||| || |||| | ||| || |||| || || Sbjct 172422 AGAGCTCTGAAGGCTTCACCTTCCACATATCAAACTGGAGCACGCCCTCCGAC--GCAGG 172479 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCC--TCG 153323 || ||||| |||| || |||| | ||||| || || || | || Sbjct 172480 CGATCCTTTAAACGACGAGTAGGGCCCTTCGCTCTTTGCCAGCTC-CATTGAGGCAGTCA 172538 Query 153324 AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCT- 153382 | |||| | | ||| ||||| ||| |||| | || || | ||| || || Sbjct 172539 A-CGCGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTTAGCTC--CCGGGCCTCCGGAG 172595 Query 153383 -CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 ||| |||||||||| || || ||| || || ||||| ||||||| ||| || || | Sbjct 172596 ACTCAAACGGCATGCGGAGAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCAA 172655 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGGGATAGTGATTGCGATCG 153500 | ||||| || | ||||||| || ||| | | || || || ||| ||| Sbjct 172656 TCGGTCGGTGGCGCATGTTGCTGTTTTGGGC-CTCTTCAACTGGGTAATGGTTGACGTCG 172714 Query 153501 ATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCA 153560 || || | |||||||| || || || || | || | | | | || |||| ||| || Sbjct 172715 ATGATCCTATTGAGGTTACGGACGACGACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCG 172774 Query 153561 TAG--------GTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGAT 153612 ||| ||||| ||||||| | ||| || ||| | || ||||||| Sbjct 172775 TAGCAGCCCTGGTCATA--GTCGACGA--AGGCAGG----CAGGGCTAGCGAGGCCAGAT 172826 Query 153613 TACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGC 153672 | ||||| || || || | | ||||| ||||| || | ||| ||||| | Sbjct 172827 TGCAGACAGCAACTTCATCAGGTGCAGAGTACTCAACGATTTCCGTGCAAAGGTTCGAAC 172886 Query 153673 ATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCA 153732 ||| ||||| || | |||||||| ||||| ||||| || ||| | |||| Sbjct 172887 TCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAATGATCCTTGTACAGCA 172946 Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTC 153792 || |||| ||| || || || ||| | |||| | ||| | ||| || | Sbjct 172947 TGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACCACAGCTTCTGAGCCC 173006 Query 153793 GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 ||||| || || |||||||||| |||||| |||||||| |||||| || | Sbjct 173007 GCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCAT 173066 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 |||||||||||||||| || |||||||| | | || ||||| |||| ||| | ||| Sbjct 173067 CGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCGTCCAATCACCGT 173126 Query 153913 CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 | ||||| ||||||||| || || | ||| || || | | ||||||||| | Sbjct 173127 TTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGAG 173186 Query 153973 CCTTGCA-ATCCTCCGCGCCCATG----TTGCGTTTCAGATTGAGCACGCTATAGATGTC 154027 || | | |||||| | ||||| ||||| || || || | | ||| || Sbjct 173187 -CTCGAACCTCCTCCTTG-CCATGGTTCTTGCG---CAAATCCAGAAACTCAAAGACATC 173241 Query 154028 GGCGTGCCA-GGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGAT 154083 || ||||| || || | ||| | ||| | ||||||| ||| || |||||||| | Sbjct 173242 AGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGT 173301 Query 154084 CGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGC 154143 |||||| ||| || | ||||| ||||| || | |||||| | ||| | | ||| | Sbjct 173302 CGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTCC 173361 Query 154144 CGTTGGT---CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAA 154200 ||||||| | | || | | |||| || || | |||||||||| | || | Sbjct 173362 CGTTGGTGCCGGCAATG--CAAG-AGCCGGTAGCACGGATCCGATGCACGTTGAGCCCGA 173418 Query 154201 TGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCG 154259 |||| ||| | ||| || || ||||| ||| ||||| ||| ||||| ||| Sbjct 173419 TGCCACCGGCCATCTTAGAGATCATGGCGCACGTC-TTGAGCGTGTCGTAAATGCCCTCG 173477 Query 154260 ATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCC 154318 ||||| || || | | | | | ||| ||||| ||| ||| | | || |||| || Sbjct 173478 ATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTG-GCACTGAGGCGTGCC 173536 Query 154319 CGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGT 154378 || || || | || ||| || || || || || | ||| | | |||||| Sbjct 173537 AGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTACGT 173596 Query 154379 TTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTG 154438 ||||| | | ||||||| ||||| || || | || |||||||||| |||||| Sbjct 173597 TTCGAGGACTCGGTCGATATTGTCGCCCCATATACCCACGGCAACGCGCATGATCATGTG 173656 Query 154439 CTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTT 154498 || || || || ||| | ||| | ||||| ||||| | || || || || Sbjct 173657 TTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCAGATAAGAACGCTCCAGAGTCTT 173716 Query 154499 GTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553 | | || ||||||| || | ||| || | |||| |||||||| ||||||| Sbjct 173717 GAAGCCAAAATACTGATAGTTAAAGTCCCGGTCATAGATGATGGCCGAATCGAGC 173771 >seq24 Length=328731 Score = 138 bits (152), Expect = 1e-27 Identities = 353/524 (67%), Gaps = 19/524 (4%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||||||||| | ||||| || |||||| || | | | | | Sbjct 173572 GTTCCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCA 173631 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | || | ||| |||||||||| ||| |||||||| | || ||| || | Sbjct 173632 TCGTTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCC 173691 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 |||||| ||||||| | | || | | ||| | ||||| ||| |||| || |||| Sbjct 173692 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAAC 173751 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 || | || ||||| || ||||| |||||||||||||||| || ||| || | || Sbjct 173752 GAACTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATG--TCTCCTGC---ACT 173806 Query 52566 CGCGTGACC-GAAAAATTGGATTCGGACAC-GATC--CTGAG-CATGTTCAAGGAGGCGG 52620 ||| ||| ||||| || | | || | || || | ||| ||| || || | Sbjct 173807 CGC---ACCTCAAAAACCGGGCCAGCAAACAGGTCATCTATGACATCATCACCGATGCCG 173863 Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 | || |||||| | || ||| | || | || ||||| || | || |||||||||| Sbjct 173864 TCGCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACG 173923 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGGG 52739 | | ||| |||| |||||||| || || || || || | || ||| || ||| Sbjct 173924 CTACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CT-GGG 173981 Query 52740 CAGCCAAAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 || | ||| | | | | ||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 173982 CAACGAAAAGA-TGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAG 174040 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 |||||| |||||||||||||| ||||| || || || ||| || Sbjct 174041 GGGGCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTATCAG 174084 >seq70 Length=137430 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||| |||||||||| || || || ||||| || || |||| | | Sbjct 82944 CTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAA 82885 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| || ||||| ||||| || || || || || ||||| ||| | || | || | | Sbjct 82884 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGT 82826 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 ||| | | |||||| | ||||||||||| | || | || || || || || ||||| Sbjct 82825 TGT-CGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTG 82767 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 82766 ACAAAGATCTGCAT 82753 >seq12 Length=470578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| ||||| |||| || | ||||| | |||||||| ||||||||||||||| | Sbjct 223883 CCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 223824 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| | ||||| |||| | |||| | || ||||| || ||||| Sbjct 223823 AAGGTCCTGCCA-TCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGG 223765 Query 138507 TATACCTTCTTTGTC 138521 ||||| || ||||| Sbjct 223764 AATACCCTCCTTGTC 223750 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || ||||| ||||| ||||||| |||||| || || |||||||| |||| | | Sbjct 224303 TCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAAT 224244 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTG 138542 || || ||||||||||| || || || ||||| ||||| ||||| || | |||| Sbjct 224243 ATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTG 224184 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | || || | || || || || | || | ||| || || |||| ||| || || Sbjct 224183 -TCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGAC 224125 Query 138603 AAAAATCTGCAT 138614 || || ||||| Sbjct 224124 GAATATTTGCAT 224113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258814504160