Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq12 113 4e-20
seq69 100 3e-16
seq70 98.7 9e-16
>seq12
Length=470578
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| || || | || | || | ||| |||||||| || || ||||||||| |
Sbjct 224111 CCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGAC 224052
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || ||||| |||||| ||||| ||||| || ||
Sbjct 224051 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGA 223992
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||||||| ||| | | |||| |||||| | ||||||
Sbjct 223991 ATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACT 223932
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| ||||| || | || || ||||| || |||||
Sbjct 223931 TCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885
Score = 96.9 bits (106), Expect = 3e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| || |||| || | ||||| |||||||| || ||||| ||||| ||| |
Sbjct 223883 CCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 223824
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | ||| || | ||||||||| || ||||||| || || |||||||||||
Sbjct 223823 AAGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGGA 223764
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037
|| |||||||||||| ||| || |||||
Sbjct 223763 ATACCCTCCTTGTCCTGGATCTTGGACTTGA 223733
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982
||||| |||||||||||||||| || || || ||| || || |||||||| || |
Sbjct 224303 TCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAAT 224244
Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042
|| | ||||| || ||||| || ||||| |||||||| |||||| ||| | |
Sbjct 224243 ATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTG 224184
Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102
|| | || |||| | || ||||| | || | ||| || || |||| ||| || ||
Sbjct 224183 TCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACG 224124
Query 127103 AAAATCTGCAT 127113
|| || |||||
Sbjct 224123 AATATTTGCAT 224113
>seq69
Length=174959
Score = 100 bits (110), Expect = 3e-16
Identities = 228/340 (67%), Gaps = 6/340 (2%)
Strand=Plus/Plus
Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCA--TG- 145908
|| || || ||| ||| || || |||| | |||||||||| ||||| | | || ||
Sbjct 172031 TTGAGCGACTGGGACTGGTCGATAAAAGCACCCCGGTCGGCCGCCATCTGCACCACCTGT 172090
Query 145909 CACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCG 145968
| || || ||| ||||| |||| || | || | ||||||| ||| || | |
Sbjct 172091 CGCTGCGA---AATCTCCCAGACGGTCTTGTAAAGTGCTTTGACGTCGGCGGGGATGTTG 172147
Query 145969 TCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAA 146028
|||||||| | ||||| ||||| || | ||| ||| || | | |
Sbjct 172148 GGGATGTTCTGTATGGACCCGTTTTCCGCAATGATTCGGTTCTTCATCGCGTCCGACCAT 172207
Query 146029 ATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCG 146088
| | |||||| || || |||||| || | ||||||||||||| |||||||| ||
Sbjct 172208 AAGCCCAAGTCGACCAGATCCTTGAGCAGCCAGGGGTTGACCACCTGGAACTCGCCCGCC 172267
Query 146089 AGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGT 146148
|| ||||| | | | || | |||| ||| | |||||||| |||||||||| || ||
Sbjct 172268 AGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGG 172327
Query 146149 ATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCA 146188
|| |||| ||| | || || ||||| ||||||||||
Sbjct 172328 ATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCA 172367
>seq70
Length=137430
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| |||||||| | |||| || | || | || ||| || || || || || |||
Sbjct 82982 GCGCCACCGCGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCG 82923
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || || || ||| || ||||| ||||| || |||| | |||||||| |||||
Sbjct 82922 CTCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGG 82863
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062
|| ||||||||||||||| || || ||||| |||| |||| |||||| | | |||
Sbjct 82862 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTCAGAAGACTC 82804
Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | || | || || || || || ||||| ||||| ||||||||
Sbjct 82803 CACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 82753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497364506720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |