Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 seq69 100 3e-16 seq70 98.7 9e-16 >seq12 Length=470578 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || || | || | || | ||| |||||||| || || ||||||||| | Sbjct 224111 CCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGAC 224052 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| |||||| ||||| ||||| || || Sbjct 224051 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGA 223992 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||||||| ||| | | |||| |||||| | |||||| Sbjct 223991 ATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACT 223932 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| || | || || ||||| || ||||| Sbjct 223931 TCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || |||| || | ||||| |||||||| || ||||| ||||| ||| | Sbjct 223883 CCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 223824 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | ||||||||| || ||||||| || || ||||||||||| Sbjct 223823 AAGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGGA 223764 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || |||||||||||| ||| || ||||| Sbjct 223763 ATACCCTCCTTGTCCTGGATCTTGGACTTGA 223733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 ||||| |||||||||||||||| || || || ||| || || |||||||| || | Sbjct 224303 TCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAAT 224244 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | ||||| || ||||| || ||||| |||||||| |||||| ||| | | Sbjct 224243 ATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTG 224184 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | || |||| | || ||||| | || | ||| || || |||| ||| || || Sbjct 224183 TCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACG 224124 Query 127103 AAAATCTGCAT 127113 || || ||||| Sbjct 224123 AATATTTGCAT 224113 >seq69 Length=174959 Score = 100 bits (110), Expect = 3e-16 Identities = 228/340 (67%), Gaps = 6/340 (2%) Strand=Plus/Plus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCA--TG- 145908 || || || ||| ||| || || |||| | |||||||||| ||||| | | || || Sbjct 172031 TTGAGCGACTGGGACTGGTCGATAAAAGCACCCCGGTCGGCCGCCATCTGCACCACCTGT 172090 Query 145909 CACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCG 145968 | || || ||| ||||| |||| || | || | ||||||| ||| || | | Sbjct 172091 CGCTGCGA---AATCTCCCAGACGGTCTTGTAAAGTGCTTTGACGTCGGCGGGGATGTTG 172147 Query 145969 TCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAA 146028 |||||||| | ||||| ||||| || | ||| ||| || | | | Sbjct 172148 GGGATGTTCTGTATGGACCCGTTTTCCGCAATGATTCGGTTCTTCATCGCGTCCGACCAT 172207 Query 146029 ATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCG 146088 | | |||||| || || |||||| || | ||||||||||||| |||||||| || Sbjct 172208 AAGCCCAAGTCGACCAGATCCTTGAGCAGCCAGGGGTTGACCACCTGGAACTCGCCCGCC 172267 Query 146089 AGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGT 146148 || ||||| | | | || | |||| ||| | |||||||| |||||||||| || || Sbjct 172268 AGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGG 172327 Query 146149 ATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCA 146188 || |||| ||| | || || ||||| |||||||||| Sbjct 172328 ATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCA 172367 >seq70 Length=137430 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | |||| || | || | || ||| || || || || || ||| Sbjct 82982 GCGCCACCGCGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCG 82923 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || || ||| || ||||| ||||| || |||| | |||||||| ||||| Sbjct 82922 CTCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGG 82863 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||||||||||||| || || ||||| |||| |||| |||||| | | ||| Sbjct 82862 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTCAGAAGACTC 82804 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || || || ||||| ||||| |||||||| Sbjct 82803 CACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 82753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497364506720