Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq69 232 8e-56 seq18 82.4 9e-11 >seq69 Length=174959 Score = 232 bits (256), Expect = 8e-56 Identities = 962/1502 (64%), Gaps = 28/1502 (2%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| ||||| || ||||| | | |||||||||| |||||| ||||| |||||||| Sbjct 172256 AACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 172315 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| || | |||||| | ||| ||| || ||||| || |||| || || |||||| Sbjct 172316 TTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCAGACTGTTG 172375 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT- 116054 || | || | || | || | ||| ||| | ||||| || || |||| || Sbjct 172376 CGTATGCCATACTCCTTGATCTGCTCCCGGAGCGTTTCCCACTCCCAG---AGCTCTGAA 172432 Query 116055 --CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAAT 116112 || | ||| |||||||||||||||||| | || | ||||| |||||||| | ||| Sbjct 172433 GGCTTCACCTTCCACATATCAAACTGGAGCACGCCCTCCGACGCAGGCGATCCTTTAAAC 172492 Query 116113 GTCTCATATGGGCCCTCAACCTCCGCCAATTC---GGAGCTCGCCTCGAGGGCTGCGTGA 116169 | | || || || || || |||| || ||| || | || ||||| Sbjct 172493 GACGAGTAGGGCCCTTCGCTCTTTGCCAGCTCCATTGAG---GCAGTCAACGCGGCGTGG 172549 Query 116170 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA 116229 || || ||||| || || || | || |||||| || ||||||| | Sbjct 172550 TAGATGGTCTCGAATATTTTCTGGTTTAGCTCCCGGGCCTCCGGAGACTCAAACGGCATG 172609 Query 116230 CGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289 ||| | ||| |||| || || || |||||||| | ||||| || || || | | Sbjct 172610 CGGAGAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCAATCGGTCGGTGGCGC 172669 Query 116290 ATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349 || || ||| | || || || || ||| || ||||| | |||||| || Sbjct 172670 ATGTTGCTGTTTTGGGCCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGG 172729 Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 116409 || | ||| |||| || | || || ||||| | | | || | | || || Sbjct 172730 TTACGGACGACGACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGGTCA 172789 Query 116410 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 | | ||| | ||| ||||| | || |||||||| || |||| ||||| Sbjct 172790 TAGTCGACGAAGGCAGGCAGGGCTAGCGAGGCCAGATTGCAGACAGCAACTTCATCAGGT 172849 Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 ||| |||||| | |||||||| || | || |||||| ||||||||||| ||||||| Sbjct 172850 GCAGAGTACTCAACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTT 172909 Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTT 116589 ||||| ||| ||| || ||||||||| ||||| | || | ||||| ||||| Sbjct 172910 TGATTGCTCTTGCGGTTGCAATGATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTC 172969 Query 116590 TGGGACTT-GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 | | |||| || |||| | ||| | | || | || |||| || | | | || | Sbjct 172970 T-GTACTTCCAGGATAGAATACCACAGCTTCTG-AGCCCGCACCGTCTTGCGGCCACGGC 173027 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGC 116706 |||| |||||||||| ||| || |||||||| || || || ||| || | || Sbjct 173028 CCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATC-GCCGTAGCAGTCGGCCAGA 173086 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || | | || || | ||| | ||| | ||| | ||| || ||||||||| Sbjct 173087 CCGGGACATTCGTTGGGGCACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATG 173146 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 || ||||| || ||||| || || ||||||| || ||| ||| | || || | || Sbjct 173147 AACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGAGCTCGAACCTCCTCCTTGCCA 173206 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCA-CGGTTCCAGGTACAC 116885 || || ||||| |||| ||| || | || ||| || ||||| || |||||||| | Sbjct 173207 TGGTTCTTGCGCAAATCCAGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATAT 173266 Query 116886 CGCGATTGACCCCTTGCGAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAA 116941 || | | | ||| || | || |||||| || || | ||||| ||||| Sbjct 173267 GGC-AAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAA 173325 Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT 117001 | || |||||||| ||||||| ||| | || || || || || ||| | ||| Sbjct 173326 AGACACGAAGCATGGGAATGACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAGAGC 173385 Query 117002 TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTG 117061 | | || | || || | || | || || || || ||| ||| ||||| | Sbjct 173386 CGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCACCGGCCATCTTAGAGATCATGG 173445 Query 117062 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 117121 ||||| | |||| || |||| || || ||||| |||| |||| | | | ||||| Sbjct 173446 CGCACGTCTTGAGCGTGTCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCAACGAGGA 173505 Query 117122 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 117181 |||| |||| ||| | || || ||||||||||| || | || | ||| ||| Sbjct 173506 AGCACGAGGACAGTTGGCACTGAGGCGTGCCAGCGTTGAACAGCGCCGGCGACGCATGGG 173565 Query 117182 TGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCC 117239 ||| | | |||| |||||| | ||| || || | ||| | || | || || Sbjct 173566 TGA--AGAGCTTGCTGGACATGAGGTTGTACGTTTCGAGGACTCGGTCGATATTGTCGCC 173623 Query 117240 GTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 117299 ||||| | | || ||||| | ||||| |||||| || | | | || || Sbjct 173624 CCATATACCCACGGCAACGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGCCGTC 173683 Query 117300 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 |||| || | || ||| ||||| ||||||| |||||||| | ||| | |||| Sbjct 173684 GAGCTTCAGCAGATAAGAACGCTCCAGAGTCTTGAAGCCAAAATACTGATAGTTAAAGTC 173743 Query 117360 CC 117361 || Sbjct 173744 CC 173745 >seq18 Length=371689 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 |||||||| || || ||||| | ||||| || ||| | ||| | || | || | Sbjct 185188 GCGTCAATCTCATCGATGAAGATTATACATGGAGCATTCTTACGACCCTCTGCGAATAAG 185247 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGGAAC 12999 || || ||||| | ||||||||||||||||||||||| ||| | || | | || Sbjct 185248 TCGCGTACTCTGGACGAACCGACACCCACAAACATCTCCATAAACTCGGACCCACTGACG 185307 Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 | || |||| ||| || || || || |||| ||| ||||| || || |||| Sbjct 185308 CT--GAAAAAGGCGACTCCTGACTCTCCAGCCGTGGCCTTGGCTAGGAGTGTTTTACCCG 185365 Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || || ||||||| |||||||| |||||| ||||||| Sbjct 185366 TGCCCGGAGGTCCGGCGAGAATAGCACCACGCGGGATCTTGGCACC 185411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502767410480