Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq70 132 1e-25 seq12 120 7e-22 >seq70 Length=137430 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| ||||| |||||| || | ||| ||||| || || Sbjct 82973 CGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTCAGGGTT 82914 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||||||||| |||||||| ||||||||||| || ||| || Sbjct 82913 CGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCC 82854 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | || || || | Sbjct 82853 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGA 82794 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| ||||| ||||| || || Sbjct 82793 GTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTG 82756 >seq12 Length=470578 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| | || ||||| || |||| |||||| || | || ||| | ||||| Sbjct 224096 AGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCC 224037 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||| || || || ||| || || ||| Sbjct 224036 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCC 223977 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || |||||| |||| |||||| | | ||| || ||||| ||||||||| Sbjct 223976 TGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTC 223917 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || |||||||| ||||| Sbjct 223916 TTGCCAGTTAATGTCTTCACAAAGATTTG 223888 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| || || || |||||||| || | ||||||||| | ||| ||||| ||||| Sbjct 223869 CAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTCCTGCCATC 223810 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||| ||| |||||||| ||||| | || || || || ||| ||| || || || Sbjct 223809 CTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGGAATACCCTCCTTGTC 223750 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||| | | ||||| || | |||||||| Sbjct 223749 CTGGATCTTGGACTTGACGTTATCAATAGTGTTAGAGGACTCTACCTCTAGGGTGATCGT 223690 Query 199597 CTTACCCGTGA 199607 ||| || |||| Sbjct 223689 CTTTCCAGTGA 223679 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| |||||||| | ||| || || || | ||||| || || ||| Sbjct 224333 CGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTCAGAGTA 224274 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| || |||||||| || ||||| ||||| ||||| || ||| ||| Sbjct 224273 CGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCCT 224214 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || |||||| || | || || | | ||| || ||||| Sbjct 224213 TCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACTTCCAAA 224154 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| | ||| || || || ||||| Sbjct 224153 GTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTG 224116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178912869348726