Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq24 158 1e-33 seq12 98.7 1e-15 seq14 93.3 4e-14 >seq24 Length=328731 Score = 158 bits (174), Expect = 1e-33 Identities = 345/508 (68%), Gaps = 18/508 (4%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || ||||| || || ||| || || ||||| || ||||| ||| | | || ||| Sbjct 174086 TTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTT 174027 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| ||||| ||||| || | | |||| ||| | |||| ||| ||||| Sbjct 174026 TCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCC---CAGTGCGACG 173970 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCC 132777 || || | |||||| ||||||||||| || ||| ||| ||| || || | || Sbjct 173969 AGAAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCG---TTCATGCCA 173913 Query 132778 AGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836 || | |||| ||||| |||||||| ||||| ||| ||||||||||| || ||||| Sbjct 173912 AGTAATGCGCAG-GGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGT 173854 Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896 || ||| || | | | ||| | ||| | | ||| | || | || Sbjct 173853 GATGATGTCATAGATGACCTGTTTGCTGGCCCGGTTTTTGAGGTGCGAGTGCAGGAGACA 173794 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 |||||||| ||||| || || || | ||||||||||||||| || |||||||| Sbjct 173793 TGCAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCC 173734 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 ||||||||||| || || |||||||| || |||| ||| || || |||||||| Sbjct 173733 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGAT 173674 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG-TG-GCTTCTTTGCTGGCG 133074 |||||||| || || || ||||||| ||| | | |||| || | || | | ||| | Sbjct 173673 ACCCTCGACCGCGGCAAAGGCCACCAAGCGTTGAGCAAACGATGAGTTTTTGTCCTG--G 173616 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 |||||||| | ||||| |||||||||| Sbjct 173615 ATCCAGCGTATAGCCCAGTCGGCCTTTT 173588 Score = 138 bits (152), Expect = 1e-27 Identities = 196/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||| ||||| ||| || || | || ||||| | ||||||||| || ||||| Sbjct 173456 TAGGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAAT 173397 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || |||||| | ||| || || ||| ||||| |||| ||| Sbjct 173396 CCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTT 173337 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 || |||||||||||||| |||||||||||||||||| | ||| | |||| Sbjct 173336 TCATTGACGATGCCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTT 173277 Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| || |||| ||| | |||||| || ||||||||| || || | |||||| Sbjct 173276 TCGTCATCATTCAGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCG 173217 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | |||||||| || ||||| || || |||||||| Sbjct 173216 GCTGTCCAAAATGAGGCCTCTGCCTTCTTGTACAT 173182 >seq12 Length=470578 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || ||||| | || ||||| | || Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || ||||||| ||||| ||||| |||||| | || ||| Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAA 224004 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | || || || ||| |||||| Sbjct 224005 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAAC 224064 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | ||| |||| | || || |||||| | ||||| Sbjct 224065 ATCCAGAAAGAGTCCACGTTGCACCTTGTCCTTCGTTTGCGCGGCGG 224111 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || | ||||| || || || || | || || || | | Sbjct 224113 ATGCAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCG 224172 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || || | | || ||||| | ||||| || || |||||| ||||||| Sbjct 224173 GATACGATTGACAATG-TGAAGTCGAAAATACAAGACAAGGAAGGCATTCCCCCCGACCA 224231 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || || ||||| ||||| || | || || || | ||| ||||| Sbjct 224232 ACAGCGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACAA 224291 Query 38423 CATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||| |||| || |||| | ||||||||| Sbjct 224292 TATTCAGAAAGAAAGC-ACTTTGCACCTTGTGCTGCGT 224328 >seq14 Length=772799 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||||||||||||| |||| |||||| | | || | | Sbjct 70028 TTCGTCAAGACCCTAACGGGCAAAACCATCACCCTCGAGGTCGAGTCGTCGGAAACGATC 69969 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | ||||| || || | || || |||| ||||| | || ||||| || || Sbjct 69968 GATAACTTTAAATCCAAGATTCAGGATAAGGAGGTTATTCCTCCGGATCAACAACGACTG 69909 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || ||||| ||| ||||||||||||||| Sbjct 69908 ATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAAG 69849 Query 38433 G 38433 | Sbjct 69848 G 69848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169186251520