Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq84 401 8e-107 seq24 84.2 3e-11 >seq84 Length=74915 Score = 401 bits (444), Expect = 8e-107 Identities = 1053/1589 (66%), Gaps = 27/1589 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||| || || || || ||||| || ||||| | ||| |||||| ||||| ||||| Sbjct 25297 TTCGTCCTCCTCCTTGTACTTCTCTGCATCCGACAGCATGCGTTCAATCTCTTCCTTCGA 25238 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || |||||| | ||| || || | | |||| || | Sbjct 25237 CAGGCGGCCCTTGTCATTGGTGATGACAATCTTGTTGGACTTGCCAGTGCCCTTTTCCAC 25178 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || ||||||| || || || |||||||| || || | || | || || || Sbjct 25177 GGCCGAAACATTCATGATGCCGTTAGCATCAACGTCAAAAGTGACCTCGATCTGGGGAAC 25118 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | ||||| || || | ||||| | ||||| | |||| ||| | Sbjct 25117 ACCGCGAGGCGCAGGCGGAATGCCAGTAAGCTCAAACTTGCCAAGCAGGTTGTTGTCCTT 25058 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGT 6865 | || || || || || || || | ||| | ||||| ||||| || || Sbjct 25057 GGTGCGCTGGCGCTCTCCCTCGTATACCTGAATGAGGACACCG--GGTTGGTTGTCGGAA 25000 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || || ||||| | ||||||| ||||| || || || | ||||| | | | Sbjct 24999 AATGTCGAAAAGATCTCAGACTTCTTAGTGGGAATGGTGGTGTTACGAGGAATCAGCTTG 24940 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| || || || ||| |||| ||||| ||||| || | |||||||| |||| Sbjct 24939 GTCATCATGCCGCCGGCAGTCTCGATACCAAGGGACAGGGGCGCAACGTCCAATAGTAGG 24880 Query 6986 AGGTCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | || | | || | | || || | || ||||| || ||||| | || Sbjct 24879 ATCTCGTTAGTCGACTTGGAAGAAGTGTCGCCAGATAGAATGGCAGCCTGGACGGCTGCG 24820 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| || || || || |||||||| || | || || | ||||| ||||| || || Sbjct 24819 CCGTAGGCAACGGCTTCGTCGGGGTTGATAGACTTGTTGGGCTCTTTGCCGTTGAAGTAG 24760 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || | | | | ||||| ||||| || || || || ||||| | || || ||| Sbjct 24759 TCGGTAATGAGCTTCTGAATGCGGGGGATGCGAGTAGAGCCGCCGACAAGGACAATCTCA 24700 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | ||||| ||||| ||||| | || ||| ||||| || | || Sbjct 24699 TGAACTTTGCTCTTATCAATCTTGGCATCCGCAAGAACGCGGTCGACTGGCTGGATGGTA 24640 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 |||||||| || || || ||||| ||||| |||||||| |||||||| |||||| Sbjct 24639 GAGCGGAACAAATCTTGGCAAAGCTCCTCGAAACGAGCACGGGTGATGGATGTGTAGAAA 24580 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || || | | || ||||| || || | || ||||||| ||||| | || Sbjct 24579 TCGATACCCTCAAACAGAGAGTCAATCTCGATCGAGGTCTGTGCCGAGGAAGACAGTGTG 24520 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || ||||| || || || || | || ||||||||||| ||| ||| | Sbjct 24519 CGCTTGGCTCGCTCGCAGGCAGTGCGAAGTCGGCGAAGGGCACGGCTGTTCGAGGACAAG 24460 Query 7403 TCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTG-TCGAAGGAGTCTCGAAT--C 7458 || ||||| || || || || || || |||| |||||| | || | ||| | | Sbjct 24459 TCCTTCTTGTGCTTGCGCTTGAATTCGTTCAC-GAAGTGGTTGACCAAA---CGATTGTC 24404 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 |||||| |||||||| | || ||||| || || |||| ||||| || || || || | Sbjct 24403 GAAATCCTCACCACCAAGATGGGTATCGCCAGCTGTCGACTTGACCTCGAATATTCCCTC 24344 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || ||||| || ||||||||||| | |||||||||||| ||||| Sbjct 24343 CTCAATGGTAAGGAGGGATACATCGAATGTACCACCACCTAAGTCAAAAATGAGGACGTT 24284 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 ||| | || |||||||| || || || || || || |||||||| ||||| || Sbjct 24283 GCGCTCGCCCTCCACTTTCTTATCCAGGCCATAAGCAATGGCAGCCGCCGTAGGTTCGTT 24224 Query 7639 AATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGT 7696 |||||| || | |||| ||||| || ||||| | ||| || || || || ||||| ||| Sbjct 24223 AATAATGCGCAGGACA-TTCAGACCTGCAAT-GAGGCCGGCGTCCTTGGTGGCTTGACGT 24166 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| ||||| | ||| ||| Sbjct 24165 TGGCTGTCGTTGAAGTAGGCAGGGACAGTGATGACGGCGTTGGTGACAGTGCCACCAAGA 24106 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || | || ||| || || | |||||||| || || ||||||| | Sbjct 24105 TAGCTCTCGGCAGTCTCGCGCATCTTAGTCAACACCATCGAAGAGATTTCTTCAGGTGTG 24046 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || ||| ||| | || || || || |||||||| |||| ||| || | || | | Sbjct 24045 AA-TGTCTTCTTCTCTCCCTTGAACTCAACTTCTATCACGGGCTTGCCGGCTTTATC--- 23990 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | || ||| | | ||| ||||| ||| | || || | || || || | Sbjct 23989 AACAATTTTAAAAGGGAAATGCTTCATGTCGGCCTGAACTTCGGCATCGCTGAATTTGCG 23930 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||| || | ||||| ||||| || || ||||| | ||||||||||| ||| ||||| Sbjct 23929 TCCAATCAACCGCTTCGCATCGAAGACAGTGTTATGAGGGTTCATGGCCACTTGATTCTT 23870 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || || || || || || | ||||| || |||||| | || || || || Sbjct 23869 CGCGGCATCGCCAATCAGGCGCTC---TGTGTCCGTGAAAGCGACGAAGGAGGGAGTGGT 23813 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||||| ||||| || || ||||| || || || || | | | ||| ||| ||||| Sbjct 23812 GCGATTGCCTTGATCATTGGCAATGATCTCACACCGATCCTCTCGGAAGATGCCCACGCA 23753 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 ||| ||||| || || || || || |||| Sbjct 23752 CGAGTACGTGGTACCCAAGTCGATGCCGA 23724 >seq24 Length=328731 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| ||||| || |||||||| |||||||| |||||||| | || ||||| || ||||| Sbjct 174081 ATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTTTCCAT 174022 Query 115122 AAAATCAAAGGGATTT 115137 ||||||||||||||| Sbjct 174021 GAAATCAAAGGGATTT 174006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128211165520