Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq84 145 6e-29
seq12 114 1e-19
>seq84
Length=74915
Score = 145 bits (160), Expect = 6e-29
Identities = 331/489 (68%), Gaps = 12/489 (2%)
Strand=Plus/Plus
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
||| || ||||||||||||||||| || | || ||||| || | || ||||||||||
Sbjct 23782 TGAGATCATTGCCAATGATCAAGGCAATCGCACCACTCCCTCCTTCGTCGCTTTCACGGA 23841
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAA 550170
|| || | | |||| ||||| || || ||||| |||| || || ||| ||
Sbjct 23842 CACAGAGCGCCTGATTGGCGATGCCGCGAAGAATCAAGTGGCCA-TG--AACCCTCATAA 23898
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
||| | || ||||| || || || |||||| | | || | ||| | ||||||||
Sbjct 23899 CACTGTCTTCGATGCGAAGCGGTTGATTGGACGCAAATTCAGCGATGCCGAAGTTCAGGC 23958
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290
|| |||||||||| ||||| |||||||| || | || || || || ||||
Sbjct 23959 CGACATGAAGCATTTCCCTTTTAAAATTGTTGATAAAGCCGGCAAGCCCGTGATAGAAGT 24018
Query 550291 T-ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348
| | | | |||| | || | ||| |||| ||| |||| || || ||||| ||
Sbjct 24019 TGAGT--TCAAGGGAGAGAAGAAGACATTCACACCTGAAGAAATCTCTTCGATGGTGTTG 24076
Query 550349 ATGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407
| || ||| | || ||| || || | | ||||| || || | || || ||
Sbjct 24077 ACTAAGATGCGCGAGACTGCCGAGAGC-TATCTTGGTGGCACTGTCACCAACGCCGTCAT 24135
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||||| || || || || || ||| ||||||||||| || || || || || | ||
Sbjct 24136 CACTGTCCCTGCCTACTTCAACGACAGCCAACGTCAAGCCACCAAGGACGCCGGCCTCAT 24195
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
||| || || ||||| || || ||||| || |||||||| || ||||| |||| |||||
Sbjct 24196 TGCAGGTCTGAATGTCCTGCGCATTATTAACGAACCTACGGCGGCTGCCATTGCTTATGG 24255
Query 550528 ACTTGATAA 550536
|| |||||
Sbjct 24256 CCTGGATAA 24264
>seq12
Length=470578
Score = 114 bits (126), Expect = 1e-19
Identities = 161/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315
||||| || ||||| || | || |||||||| |||||||||||| ||| ||||| |
Sbjct 224330 AGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATC-GCTCAGAGTACG 224272
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
| |||||| ||||||||||||||||| || || | || || || || ||||| |||||
Sbjct 224271 TCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTC 224212
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434
|| ||||| ||||| || || ||||| ||||| | || | | ||| | ||
Sbjct 224211 CTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCG-AAGATTCAACTTCCAAAG 224153
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||| || || || || | ||| || ||||| |||||||||
Sbjct 224152 TAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCATA 224112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029265432753220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |