Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq84 145 6e-29 seq12 114 1e-19 >seq84 Length=74915 Score = 145 bits (160), Expect = 6e-29 Identities = 331/489 (68%), Gaps = 12/489 (2%) Strand=Plus/Plus Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||| || ||||||||||||||||| || | || ||||| || | || |||||||||| Sbjct 23782 TGAGATCATTGCCAATGATCAAGGCAATCGCACCACTCCCTCCTTCGTCGCTTTCACGGA 23841 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAA 550170 || || | | |||| ||||| || || ||||| |||| || || ||| || Sbjct 23842 CACAGAGCGCCTGATTGGCGATGCCGCGAAGAATCAAGTGGCCA-TG--AACCCTCATAA 23898 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | || ||||| || || || |||||| | | || | ||| | |||||||| Sbjct 23899 CACTGTCTTCGATGCGAAGCGGTTGATTGGACGCAAATTCAGCGATGCCGAAGTTCAGGC 23958 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 || |||||||||| ||||| |||||||| || | || || || || |||| Sbjct 23959 CGACATGAAGCATTTCCCTTTTAAAATTGTTGATAAAGCCGGCAAGCCCGTGATAGAAGT 24018 Query 550291 T-ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | | | |||| | || | ||| |||| ||| |||| || || ||||| || Sbjct 24019 TGAGT--TCAAGGGAGAGAAGAAGACATTCACACCTGAAGAAATCTCTTCGATGGTGTTG 24076 Query 550349 ATGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | || ||| | || ||| || || | | ||||| || || | || || || Sbjct 24077 ACTAAGATGCGCGAGACTGCCGAGAGC-TATCTTGGTGGCACTGTCACCAACGCCGTCAT 24135 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || || || || || ||| ||||||||||| || || || || || | || Sbjct 24136 CACTGTCCCTGCCTACTTCAACGACAGCCAACGTCAAGCCACCAAGGACGCCGGCCTCAT 24195 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||| || || ||||| || || ||||| || |||||||| || ||||| |||| ||||| Sbjct 24196 TGCAGGTCTGAATGTCCTGCGCATTATTAACGAACCTACGGCGGCTGCCATTGCTTATGG 24255 Query 550528 ACTTGATAA 550536 || ||||| Sbjct 24256 CCTGGATAA 24264 >seq12 Length=470578 Score = 114 bits (126), Expect = 1e-19 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || ||||| || | || |||||||| |||||||||||| ||| ||||| | Sbjct 224330 AGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATC-GCTCAGAGTACG 224272 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | |||||| ||||||||||||||||| || || | || || || || ||||| ||||| Sbjct 224271 TCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTC 224212 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434 || ||||| ||||| || || ||||| ||||| | || | | ||| | || Sbjct 224211 CTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCG-AAGATTCAACTTCCAAAG 224153 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || || || || | ||| || ||||| ||||||||| Sbjct 224152 TAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCATA 224112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029265432753220