Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq53 105 5e-18 >seq53 Length=178968 Score = 105 bits (116), Expect = 5e-18 Identities = 267/401 (67%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 |||||| |||||| | ||||||| || || | |||||||| |||||| ||||| Sbjct 126443 CACGTAGAACTGAGCAAGCATGTGGCAGGGCGGCAAAGCCATGATCTTCAAGTCCTTGGG 126384 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCAC 30104 |||||| || ||| ||||||||||| ||| | || |||||| | || || || Sbjct 126383 GTTCCATGCAGACAAGATGATGCGCCGGTCGTACGGCATGTTCCGCAACTTGTGGATGAC 126324 Query 30105 GGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACT 30163 | || || ||||| || || ||| | | |||||| ||| | ||| ||||| Sbjct 126323 GTCG----GCAAGCTGGTCGACGCCCTGGTCGGTGTAGTCGGCCTTGGCATCCACGTACT 126268 Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 ||||| ||||||| |||||| || || || || ||||||||||| || | || | | Sbjct 126267 GAGCTCCAAAATGCCGCCACTGAAAGCCATATACGGGTCCCAGGTCACCGACCTCGCGAT 126208 Query 30224 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30283 || || || |||| | || || | || |||||| | ||||| ||||| || | Sbjct 126207 GCGAGAGACCGACGCTGTCAAGGAACTCGCGAGAGCCGTTGCCATCCCAAATCTTGACGC 126148 Query 30284 CCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCC 30342 | ||| ||| | || ||| ||||| || |||||| |||| ||| | Sbjct 126147 CTGCGTCGCTCAGCGCAAGCGAAGACGTGTTGCCCTC-GATGAACCAAAGCAACTCGGCA 126089 Query 30343 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | ||||||||| ||||| | ||| || || || || || Sbjct 126088 ATGACGGCCTTGAGGAAGACGCGCTTCGTTGTAAGAAGCGG 126048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614721544394