Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq53 105 5e-18
>seq53
Length=178968
Score = 105 bits (116), Expect = 5e-18
Identities = 267/401 (67%), Gaps = 10/401 (2%)
Strand=Plus/Minus
Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047
|||||| |||||| | ||||||| || || | |||||||| |||||| |||||
Sbjct 126443 CACGTAGAACTGAGCAAGCATGTGGCAGGGCGGCAAAGCCATGATCTTCAAGTCCTTGGG 126384
Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCAC 30104
|||||| || ||| ||||||||||| ||| | || |||||| | || || ||
Sbjct 126383 GTTCCATGCAGACAAGATGATGCGCCGGTCGTACGGCATGTTCCGCAACTTGTGGATGAC 126324
Query 30105 GGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACT 30163
| || || ||||| || || ||| | | |||||| ||| | ||| |||||
Sbjct 126323 GTCG----GCAAGCTGGTCGACGCCCTGGTCGGTGTAGTCGGCCTTGGCATCCACGTACT 126268
Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223
||||| ||||||| |||||| || || || || ||||||||||| || | || | |
Sbjct 126267 GAGCTCCAAAATGCCGCCACTGAAAGCCATATACGGGTCCCAGGTCACCGACCTCGCGAT 126208
Query 30224 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30283
|| || || |||| | || || | || |||||| | ||||| ||||| || |
Sbjct 126207 GCGAGAGACCGACGCTGTCAAGGAACTCGCGAGAGCCGTTGCCATCCCAAATCTTGACGC 126148
Query 30284 CCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCC 30342
| ||| ||| | || ||| ||||| || |||||| |||| ||| |
Sbjct 126147 CTGCGTCGCTCAGCGCAAGCGAAGACGTGTTGCCCTC-GATGAACCAAAGCAACTCGGCA 126089
Query 30343 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
| ||||||||| ||||| | ||| || || || || ||
Sbjct 126088 ATGACGGCCTTGAGGAAGACGCGCTTCGTTGTAAGAAGCGG 126048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408614721544394
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |