Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq69 165 2e-35 seq24 98.7 2e-15 >seq69 Length=174959 Score = 165 bits (182), Expect = 2e-35 Identities = 778/1220 (64%), Gaps = 38/1220 (3%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| || ||||||||||||||||| || || ||| ||| || | |||||| ||| Sbjct 172535 GTCAACGCGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTTAGCTCCCGGGCCTCCGGA 172594 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || || ||||| || || | |||| | || ||||| ||||| || || | ||| Sbjct 172595 GACTCAAACGGCATGCGGAGAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCA 172654 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 || || | ||| | | ||||| | || || ||| || || ||| |||||||| Sbjct 172655 ATCGGTCGGTGGCGCATGTTGCTGTTTTGG--GCCTCTTCAACTGGGTAATGGTTGACGT 172712 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | | |||||||| | || ||| | ||||||| ||||||||| Sbjct 172713 CGATGATCCTATTGAGGTTACGGACGACGACCTGCGTCACCTCGTGGAGCTTCTGG---- 172768 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGG 221714 || ||| || | | ||| || || || || ||||| | || Sbjct 172769 --------AAGTCGTAGCAGCCCTGGTCATAGTCGACGAAGGCAGGCAGGGCTAGCGAGG 172820 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAG 221772 |||| || || || || || || || | || | |||| | ||| || || || || Sbjct 172821 CCAGATTGCAGACAGCAACTTCATCA--GGTGCAGAGTACTCAACGATTTCCGTGCAAAG 172878 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| | | ||||| ||||||| || ||||| |||||| ||| | ||||| Sbjct 172879 GTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAATGATCCTT 172938 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| || || ||| || ||| ||| | |||| || | ||| || | Sbjct 172939 GTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACCACAGCT- 172997 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 |||| || | ||||||| | | | |||||| || | | || || ||||| Sbjct 172998 TCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCG-TACAGAGCC 173056 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | |||| | || ||||| ||| |||| || ||||| | ||| ||||| || Sbjct 173057 T--CAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCG 173114 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||| | ||| | | || | || |||||| ||||| || |||||||| || | Sbjct 173115 TCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGA 173174 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| || | | || ||||||| ||| | ||| || | || ||||| |||||||| Sbjct 173175 AGAGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAAACTCAA 173234 Query 222132 AAATGTCAGCGTGCCAC-GGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 | | ||||| ||||| |||||||| || | ||| | || || || ||||||||||| Sbjct 173235 AGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCG 173294 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| || || | || ||| |||| ||||| | || | | ||||| Sbjct 173295 CCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTC 173354 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGACA 222308 || ||||||||||| |||| | | ||| || | | | | | | | | Sbjct 173355 GAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTG--A 173412 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 ||||| |||||||| || |||||||||||||| ||||||| ||||| |||| Sbjct 173413 GCCCGATGCCACCGGCCATCTTAGAGATCATGGCGCACGTCTTGAGCGTGTCGTAAATGC 173472 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 |||| || ||| ||||| | || | || || || || |||| || | | | | Sbjct 173473 CCTCGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTGGCACTGAGGCG 173532 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATCAGATCG 222487 | ||||| ||||||| || || || || ||| ||| || ||||| || | | Sbjct 173533 TGCCAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAG-AGCTTGCTGGACATGAGGTTG 173591 Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547 ||||| || | ||||| | |||| ||||| || || || ||| | |||| | Sbjct 173592 TACGTTTCGAGGACTCGGTCGATATTGTCGCCCCATATACCCACGGCAACGCGCATGATC 173651 Query 222548 ATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCC 222604 |||| ||||| | ||| || | | || | ||||| ||||| || || ||| Sbjct 173652 ATGTGTTGGGGGCGCTCAAC-GATCTTGCCGTCGAGCT--TCAGCAGATAAGAACGCTCC 173708 Query 222605 AGAGTCTTGAACCCAAAGTA 222624 ||||||||||| ||||| || Sbjct 173709 AGAGTCTTGAAGCCAAAATA 173728 Score = 123 bits (136), Expect = 5e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||| |||||| ||||| ||| || |||| |||||| || ||| ||||| Sbjct 172192 CATCGCGTCCGACCATAAGCCCAAGTCGACCAGATCCTTGAGCAGCCAGGGGTTGACCAC 172251 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| || |||| || || | | |||||| | ||| || ||| | || |||| || Sbjct 172252 CTGGAACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCA 172311 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 |||||||||||| ||||| || | ||||||||| || ||||| || |||||||||||||| Sbjct 172312 CTCGTTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCAGACT 172371 Query 221245 GTTGCG 221250 |||||| Sbjct 172372 GTTGCG 172377 >seq24 Length=328731 Score = 98.7 bits (108), Expect = 2e-15 Identities = 285/444 (64%), Gaps = 13/444 (3%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||| || || ||||| ||||| || || ||| | ||||| ||||||||| Sbjct 173648 TGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTTGCCTCCATCTTCT 173707 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||||||| || || |||||| || || |||||||||||| ||||| | | Sbjct 173708 GGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAG 173767 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | || ||| | |||| || ||||| || || || || || ||| | || |||| Sbjct 173768 ATGAAGGTTTGCACACGGACTTTGCATGTCTCCTGCACTCG---CACCT----CAAAAAC 173820 Query 26063 CTTCTC----AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 | | || || | |||| ||||||| || || || | ||||| | || Sbjct 173821 CGGGCCAGCAAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATCGAACAAGAA 173880 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 |||| | ||||||||| | | |||| || Sbjct 173881 TTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCTACCTTGATGAAGCAG 173940 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAG 26237 || || |||| || ||||||| || || || || ||||| || | | ||||| Sbjct 173941 TATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CTGGGCAACGAAAAGATGTACAG 173999 Query 26238 TACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTT 26297 || | || || || || || ||||||||||||||| | | || || |||||||| || Sbjct 174000 GTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAAACCAACTTTTT 174059 Query 26298 TGAAAAGAGGGTCGGCGACTATCA 26321 |||||| |||| || |||||||| Sbjct 174060 CGAAAAGCGGGTTGGTGACTATCA 174083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838089096320