Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq84 129 4e-24 seq12 118 7e-21 >seq84 Length=74915 Score = 129 bits (142), Expect = 4e-24 Identities = 327/492 (66%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || ||||||||||| ||||| ||| | || || || || | || |||| || || Sbjct 23783 GAGATCATTGCCAATGATCAAGGCAATCGCACCACTCCCTCCTTCGTCGCTTTCACGGAC 23842 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | || ||||| ||||| || || |||||| || || ||| ||| ||| Sbjct 23843 ACAGAGCGCCTGATTGGCGATGCCGCGAAGAATCAAGTGGCCATGAACCCTCATAACACT 23902 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || ||||| || | |||||||| || || || ||| || || || | || Sbjct 23903 GTCTTCGATGCGAAGCGGTTGATTGGACGCAAATTCAGCGATGCCGAAGTTCAGGCCGAC 23962 Query 474572 ATGCGTCATTGGCCTTTTAA----GGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| |||| |||||||| | ||||||| | || || || ||||||| Sbjct 23963 ATGAAGCATTTCCCTTTTAAAATTGTTGATAAA----GCCGGCAAGCCCGTGATAGAAGT 24018 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | | || | || || | || ||| |||| ||| |||| ||||| ||||| || Sbjct 24019 TGAGTTCAAG--GGAGAGAAGAAGACATTCACACCTGAAGAAATCTCTTCGATGGTGTTG 24076 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 | || ||| | || || ||| | |||||||| || || | || || || Sbjct 24077 ACTAAGATGCGCGAGACTGCCGAGAGC-TATCTTGGTGGCACTGTCACCAACGCCGTCAT 24135 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||||| || || || || || || ||||||||||| || || || || || || Sbjct 24136 CACTGTCCCTGCCTACTTCAACGACAGCCAACGTCAAGCCACCAAGGACGCCGGCCTCAT 24195 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||||||||| ||||| | || |||||||| ||||| || || || || |||||||||| Sbjct 24196 TGCAGGTCTGAATGTCCTGCGCATTATTAACGAACCTACGGCGGCTGCCATTGCTTATGG 24255 Query 474865 TCTTGATAAGAA 474876 || |||||||| Sbjct 24256 CCTGGATAAGAA 24267 >seq12 Length=470578 Score = 118 bits (130), Expect = 7e-21 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||||||||| || ||||| || | || |||||||| || ||| ||||| ||| |||| Sbjct 224334 ACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATC-GCTCAGAG 224276 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| ||||| ||||| ||||| || || || ||||| || || ||||| | Sbjct 224275 TACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGC 224216 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 ||||||||||||| || || || ||| ||||| ||||| | | | || || || Sbjct 224215 CTTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACTTCCA 224156 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || | |||||| ||||| ||||| Sbjct 224155 A-AGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTG 224116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268154406775544