Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq69 183 4e-41 seq18 84.2 3e-11 >seq69 Length=174959 Score = 183 bits (202), Expect = 4e-41 Identities = 695/1082 (64%), Gaps = 28/1082 (3%) Strand=Plus/Minus Query 75524 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGG 75583 ||| | ||||| |||||||| || |||||| ||| || ||||| || | || | | || Sbjct 173350 GGTGTCATTCCCATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTCGACCAGG-GCGG 173292 Query 75584 CGTC-----GCAAGGGGTCCATCGCGGTCTACTTGGAACCA-TGGCATGCCGATATCATG 75637 | | || ||| | || | || | ||| |||| ||| |||||||| ||| || | Sbjct 173291 CAACAAGCGGCCAGGTG-CCTTTGCCATATACCTGGAGCCAATGGCATGCTGATGTCTTT 173233 Query 75638 GAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTT 75697 ||||| || || || || ||||| || | || |||| ||| | | || ||||| Sbjct 173232 GAGTTTCTGGATTTGCGCAAGAACCATGGCAAGGAGGAGGTTCGAGCTCGCGACCTCTTC 173173 Query 75698 TCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCT 75757 | | ||||||||||||| ||||| ||||||||||| || ||| | ||| | ||| | Sbjct 173172 TTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGAAAAACGGTGATTGGACG 173113 Query 75758 CTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCC 75817 || | || || || | || ||||| ||||| || || || ||||| || Sbjct 173112 CTCATGTGCCCCAACGAATGTCCCGGTCTGGCCGACTGCTACGGCGATGAATTTGAGGCT 173053 Query 75818 CTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT 75877 || ||| |||||| || ||||| | | | ||| || | || | || | | Sbjct 173052 CTGTACGAAAAGTACGAGCGCGAGGGCCGTGGCCGCAAGACGGTGCGGGCT-CAGAAGCT 172994 Query 75878 -TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGA 75936 ||| | |||| || || ||||||||| || || | || | ||||| |||||||| Sbjct 172993 GTGGTATTCTATCCTGGAAGTACAGACGGAAACGGGCAACCCGTTCATGCTGTACAAGGA 172934 Query 75937 TGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTG 75996 | ||| ||| ||||| || |||||||| |||| || || ||| || || ||||| Sbjct 172933 TCATTGCAACCGCAAGAGCAATCAAAAGAACCTGGGCACCATTCGGAGTTCGAACCTTTG 172874 Query 75997 CACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAAT 76056 ||||||||| | |||||| | | ||||| ||||| |||||| |||| || | Sbjct 172873 CACGGAAATCGTTGAGTACTCTGCACCTGATGAAGTTGCTGTCTGCAATCTGGCCTCGCT 172814 Query 76057 CGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGA 76116 ||||| || | ||| | | || || | || | | || || || || Sbjct 172813 AGCCCTGCCTGCCTTCGTCGACTATGACCAGGGCTGCTACGACTTCCAGAAGCTCCACGA 172754 Query 76117 AATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT 76176 | || || | || | || || || | |||| ||| || ||| || || Sbjct 172753 GGTGACGCAGGTCGTCGTCCGTAACCTCAATAGGATCATCGACGTCAACCATTACCCAGT 172694 Query 76177 TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCT 76236 ||| || | ||| || ||||| ||| |||| |||||| | ||||| || || || Sbjct 172693 TGAAGAGGCCCAAAACAGCAACATGCGCCACCGACCGATTGGTGTTGGTGTCCAGGGCCT 172634 Query 76237 CGCGGATGTATTTATTTTGTGCCGCTACGCAT-----TTGATTCAGATGAAGCCAAGGAG 76291 || |||| |||| || | || ||||| |||| || || ||| |||| Sbjct 172633 GGCTGATGC-----TTTTCTGGCTCTCCGCATGCCGTTTGAGTCTCCGGAGGCCCGGGAG 172579 Query 76292 ATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTG 76351 | || || || || ||||| || ||||| | || || || || Sbjct 172578 CTAAACCAGAAAATATTCGAGACCATCTACCACGCCGCGTTGACTGCCTCAATGGAGCTG 172519 Query 76352 GCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT 76411 || | | |||| |||| | | ||| | || || || ||||| | || ||||| Sbjct 172518 GCAAAGAGCGAAGGGCCCTACTCGTCGTTTAAAGGATCGCCTGCGTCGGAGGGCGTGCTC 172459 Query 76412 CAGTTTGATATGTGGGAAGGTGAAACC----AAGCTCAACTACGACTGGGATGTTCTCAA 76467 ||||||||||||| |||||||||| || |||| || || ||||| ||| Sbjct 172458 CAGTTTGATATGT-GGAAGGTGAAGCCTTCAGAGCT---CTGGGAGTGGGAAACGCTCCG 172403 Query 76468 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGC 76527 ||| | ||||||||| | || | || |||||||| || |||| || ||||| || || Sbjct 172402 GGAGCAGATCAAGGAGTATGGCATACGCAACAGTCTGCTGGTGGCCCCTATGCCGACGGC 172343 Query 76528 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 | ||| | |||||| | || || || || ||||| || || ||||| | |||||||| Sbjct 172342 CAGCACGTCGCAAATCCTTGGCAACAACGAGTGCTTCGAGCCTTACACGTCCAACATCTA 172283 Query 76588 CC 76589 || Sbjct 172282 CC 172281 >seq18 Length=371689 Score = 84.2 bits (92), Expect = 3e-11 Identities = 214/320 (67%), Gaps = 7/320 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||||||||||| || || || ||||||| || || || ||||| || || ||| Sbjct 185411 GGTGCCAAGATCCCGCGTGGTGCTATTCTCGCCGGACCTCCGGGCACGGGTAAAACACTC 185352 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 || ||| |||| || || || ||| ||| | || | ||| | | || | | Sbjct 185351 CTAGCCAAGGCCACGGCTGGAGAGTCAGGAGTCGCCTT-TTTCAGCGTCAGTGGGTCCGA 185293 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||| ||||||||||||| ||||| ||| | || || ||||| | || | | | Sbjct 185292 GTTTATGGAGATGTTTGTGGGTGTCGGTTCGTCCAGAGTACGCGACTTATTCGCAGAGGG 185233 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG--CA- 175511 || | ||| |||||||| ||||||| ||||||||||| || | |||||| || Sbjct 185232 TCGTAAGAATGCTCCATGTATAATCTTCATCGATGAGATTGACGCTATTGGCAAGTCCAG 185173 Query 175512 -ACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 ||| || | | ||| ||| || || || |||| ||| | |||||| | | Sbjct 185172 GGTGCAAGGCCGAGGCTAT-ACAGGCAACGAGGAACGAGAGGCCACACTGAATCAAATCC 185114 Query 175571 TCACCGAGATGGATGGCTTT 175590 | |||| |||||||||||| Sbjct 185113 TTGCCGAAATGGATGGCTTT 185094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565289784640