Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq84 565 3e-156 seq14 174 2e-38 seq12 154 2e-32 seq11 118 1e-21 seq18 113 6e-20 seq53 102 1e-16 >seq84 Length=74915 Score = 565 bits (626), Expect = 3e-156 Identities = 1084/1582 (69%), Gaps = 22/1582 (1%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 || ||||| || || || || ||||| || || || | | | | | ||||| ||| || Sbjct 23726 GGCATCGACTTGGGTACCACGTACTCGTGCGTGGGCATCTTCCGAGAGGATCGGTGT-GA 23784 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 ||| || | ||||| ||||| || || || ||||| || | ||| || || || || | Sbjct 23785 GATCATTGCCAATGATCAAGGCAATCGCACCACTCCCTCCTTCGTCGCTTTCACGGACAC 23844 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || || || |||| |||||||| || ||||| || ||||||||| || ||||| Sbjct 23845 AGAGCGCCTGATTGGCGATGCCGCGAAGAATCAAGTGGCCATGAACCCTCATAACACTGT 23904 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| || |||||||| | ||||| ||||| || ||| |||| || | ||| || Sbjct 23905 CTTCGATGCGAAGCGGTTGATTGGACGCAAATTCAGCGATGCCGAAGTTCAGGCCGACAT 23964 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| | | ||| | || ||||| | | || | ||||| |||| | ||||| Sbjct 23965 GAAGCATTTCCCTTTTAAAATTGTT---GATAAAGCCGGCAAGCCCGTGATAGAAGTTGA 24021 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||||||| ||| | || |||||||| || || |||||||||| ||| Sbjct 24022 GTTCAAGGGAGAGAAGAAGACATTCACACCTGAAGAAATCTCTTCGATGGTGTTGACTAA 24081 Query 195664 GATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||| |||||||| || | || || ||| | ||||| | | || || | |||| Sbjct 24082 GATGCGCGAGACTGCCGAGAGCTATCTTGG-TGGCACTGTCACCAACGCCGTCATCACTG 24140 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | ||||| ||||||| || ||||| || || || |||||||| | ||||| | Sbjct 24141 TCCCTGCCTACTTCAACGACAGCCAACGTCAAGCCACCAAGGACGCCGGCCTCATTGCAG 24200 Query 195783 GTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 |||| || |||| | | ||||| || ||||| || |||||||| ||||||||||| ||| Sbjct 24201 GTCTGAA-TGTCCTGCGCATTATTAACGAACCTACGGCGGCTGCCATTGCTTATGGCCTG 24259 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||||| ||| | || || || | || ||||| | ||||||||||| || Sbjct 24260 GATAAGAAAGTGGAGGGCGAGCGCAACGTCCTCATTTTTGACTTAGGTGGTGGTACATTC 24319 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||||| || || || | ||||| | || |||||||| || ||| | || ||||| ||| Sbjct 24320 GATGTATCCCTCCTTACCATTGAGGAGGGAATATTCGAGGTCAAGTCGACAGCTGGCGAT 24379 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTC 196021 || ||||| |||||||| |||||||| ||| | || || || | || ||| Sbjct 24380 ACCCATCTTGGTGGTGAGGATTTCGACAATCGTTTGGTCAACCACTTCGTGAACGAATTC 24439 Query 196022 CGTCGAAAGAATAAGAAAGATATTTC-TGGAA-ATCCTAGGGCTCTTCGTCGGCTTAGGA 196079 || ||| | ||||| || | || | ||| | || | || ||||| || ||| | | Sbjct 24440 AAGCGCAAGCACAAGAAGGACTTGTCCTCGAACAGCC--GTGCCCTTCGCCGACTTCGCA 24497 Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTG 196139 |||| || || || ||||| || || || ||||| |||| || || | | ||||||| Sbjct 24498 CTGCCTGCGAGCGAGCCAAGCGCACACTGTCTTCCTCGGCACAGACCTCGATCGAGATTG 24557 Query 196140 ATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGT 196199 | || ||||||| || || || ||||| ||| | || |||||||| ||||| || ||| Sbjct 24558 ACTCTCTGTTTGAGGGTATCGATTTCTACACATCCATCACCCGTGCTCGTTTCGAGGAGC 24617 Query 196200 TAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAA 196259 | | |||||||| | || | || || || | || ||| || || | Sbjct 24618 TTTGCCAAGATTTGTTCCGCTCTACCATCCAGCCAGTCGACCGCGTTCTTGCGGATGCCA 24677 Query 196260 AGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGA 196319 |||| |||||| || ||| |||| ||||||||||| || || || || || || || Sbjct 24678 AGATTGATAAGAGCAAAGTTCATGAGATTGTCCTTGTCGGCGGCTCTACTCGCATCCCCC 24737 Query 196320 AGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACC 196379 ||||| || | || | || |||||| ||||| ||||| | ||||||| Sbjct 24738 GCATTCAGAAGCTCATTACCGACTACTTCAACGGCAAAGAGCCCAACAAGTCTATCAACC 24797 Query 196380 CGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACA 196439 | || ||||| ||||| || || || ||||| |||||||| ||||| || || | ||| Sbjct 24798 CCGACGAAGCCGTTGCCTACGGCGCAGCCGTCCAGGCTGCCATTCTATCTGGCG---ACA 24854 Query 196440 ATAAT---AA--CGTCCAA-GATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | || || | || || | || ||| | || ||||| ||| | ||||| ||| Sbjct 24855 CTTCTTCCAAGTCGACTAACGAGATCCTACTATTGGACGTTGCGCCCCTGTCCCTTGGTA 24914 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 | || || || || || | ||||| || | ||| | | ||||| || ||||| |||| Sbjct 24915 TCGAGACTGCCGGCGGCATGATGACCAAGCTGATTCCTCGTAACACCACCATTCCCACTA 24974 Query 196554 AGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 ||||| | ||||||| || | |||||| || ||||| ||||| | ||||| |||| Sbjct 24975 AGAAGTCTGAGATCTTTTCGACATTTTCCGACAACCAACCCGGTGTCCTCATTCAGGTAT 25034 Query 196614 ATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 | || ||||| ||| || | ||||| ||| | || ||||| | || || | || | Sbjct 25035 ACGAGGGAGAGCGCCAGCGCACCAAGGACAACAACCTGCTTGGCAAGTTTGAGCTTACTG 25094 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | ||||| |||| || | |||||||| ||||| | || || || | || || | Sbjct 25095 GCATTCCGCCTGCGCCTCGCGGTGTTCCCCAGATCGAGGTCACTTTTGACGTTGATGCTA 25154 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 | || || | || || | || | ||| |||| ||||||| || | |||||||| | Sbjct 25155 ACGGCATCATGAATGTTTCGGCCGTGGAAAAGGGCACTGGCAAGTCCAACAAGATTGTCA 25214 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 | |||||||||||||| || || || ||||| || |||||||| ||| | ||||| | Sbjct 25215 TCACCAATGACAAGGGCCGCCTGTCGAAGGAAGAGATTGAACGCATGCTGTCGGATGCAG 25274 Query 196854 AAAAGTACAGGGAAGAAGACGA 196875 | ||||||| ||| || ||||| Sbjct 25275 AGAAGTACAAGGAGGAGGACGA 25296 >seq14 Length=772799 Score = 174 bits (192), Expect = 2e-38 Identities = 147/181 (81%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || || || ||||| || || ||||| |||||||||||||| |||||||| || || ||| Sbjct 70028 TTCGTCAAGACCCTAACGGGCAAAACCATCACCCTCGAGGTCGAGTCGTCGGAAACGATC 69969 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 |||||| | ||| |||||||||| |||||||| | ||||| || ||||| |||||||| Sbjct 69968 GATAACTTTAAATCCAAGATTCAGGATAAGGAGGTTATTCCTCCGGATCAACAACGACTG 69909 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 || || || || || |||||||||||||| || ||||| | ||||||||| | |||||| Sbjct 69908 ATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAAG 69849 Query 172051 G 172051 | Sbjct 69848 G 69848 >seq12 Length=470578 Score = 154 bits (170), Expect = 2e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 |||||||| || |||||||| ||||| ||||| || |||| || |||||| |||| || Sbjct 223681 ACTGGAAAGACGATCACCCTAGAGGTAGAGTCCTCTAACACTATTGATAACGTCAAGTCC 223740 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| || ||||| |||||||| ||||| | || ||||| || ||| Sbjct 223741 AAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAACGCTTGATCTTTGCCGGAAAA 223800 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||| | || ||||| | ||| | | || |||||| |||| ||||||||||| ||||| Sbjct 223801 CAGTTGGAGGATGGCAGGACCTTGTCCGACTACAACATTCAGAAGGAGTCTACACTACAT 223860 Query 172066 CTTGTTCT 172073 ||||| || Sbjct 223861 CTTGTCCT 223868 Score = 152 bits (168), Expect = 7e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||||||||| || | ||||| || || ||||| | || || || |||| Sbjct 223883 GTATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGT 223942 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| |||||||| | || | || || || || ||||| || ||||| || |||| Sbjct 223943 CCGACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATC 224002 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 | || || || || |||||||| || |||||||| ||||| || || || | ||||||| Sbjct 224003 AACAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACA 224062 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || | || || ||||| || | |||||||| || Sbjct 224063 ACATCCAGAAAGAGTCCACGTTGCACCTTGTCCT 224096 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||| || || || || | || ||||| || || || | || ||||| || | Sbjct 224111 GTATGCAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTT 224170 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | || | || || ||||| |||||||||||||| ||||| | Sbjct 224171 CGGATACGATTGACAATGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCCCCCGACC 224230 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 | || || || || ||||| || ||||| || |||||||||||||| || ||||||| Sbjct 224231 AACAGCGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACA 224290 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | |||| || || ||| | |||||||| || | ||||| ||||| Sbjct 224291 ATATTCAGAAAGAAAGCACTTTGCACCTTGTGCTGCGTCTTCGTGGTGG 224339 >seq11 Length=470063 Score = 118 bits (130), Expect = 1e-21 Identities = 226/330 (68%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||||| ||| || | | || |||| || | | || || | |||| Sbjct 324911 AGATGAAGGAGATTGCAGAGACCAAGCTCGGAAAAAAGGTCGAGAAGGCCGTCATCACTG 324970 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || |||||||||| || || || ||||| || ||||| || | ||| ||||| | Sbjct 324971 TGCCCGCTTACTTCAACGACAATCAGCGCCAGGCCACCAAGGATGCGGGTGCCATTGCCG 325030 Query 195783 GTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 |||| || ||| || | || || || || || || || || ||||| || ||||| || Sbjct 325031 GTCTCAA-TGTGCTGCGCATCATTAACGAGCCCACCGCTGCAGCAATCGCCTATGGCCTT 325089 Query 195842 GACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 | | |||| ||| | || |||||| | || | ||||| || |||||||| Sbjct 325090 GGCTCTGGCAAGTCGGACAAGGAGCGAAATGTTCTCATTTACGATCTTGGCGGTGGTACC 325149 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 ||||||||||| || || || ||| | || ||| | || || ||||| ||||| ||| Sbjct 325150 TTTGATGTCTCTCTGCTTAACATTCAGGGCGGTGTCTTTACTGTCAAGGCCACTGCCGGT 325209 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || || || ||||| | || |||||| Sbjct 325210 GACACGCACCTGGGTGGCCAGGACTTCGAT 325239 >seq18 Length=371689 Score = 113 bits (124), Expect = 6e-20 Identities = 170/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 198540 GGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTT 198599 |||||| ||||| ||||||||| |||||||||| | ||||| || |||||||| || Sbjct 185411 GGTGCCAAGATCCCGCGTGGTGCTATTCTCGCCGGACCTCCGGGCACGGGTAAAACACTC 185352 Query 198600 CTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CG 198656 ||||| || | || || || || | ||| ||||| ||||| | || | || || Sbjct 185351 CTAGCCAAGGCCACGGCTGGAGAGTCAGGAGTCGCCTTT-TTCAGCG-TCAGTGGGTCCG 185294 Query 198657 AGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAA 198716 ||||| || |||||||| || ||||| ||| | | || || || | || | | Sbjct 185293 AGTTT-ATGGAGATGTTTGTGGGTGTCGGTTCGTCCAGAGTACGCGACTTATTCGCAGAG 185235 Query 198717 GCACGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAG 198773 | ||| | ||| |||||||| |||||||| ||||||||||||||| |||| ||| Sbjct 185234 GGTCGTAAGAATGCTCCATGTATAATCTTCATCGATGAGATTGACGCTATTGGCAAG 185178 >seq53 Length=178968 Score = 102 bits (112), Expect = 1e-16 Identities = 218/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||||||| || ||| | |||| ||| || |||| || || || Sbjct 22017 AAGATGAAGGAGACTGCCGAGGCTTATCTTTCTAAACCTGCCAAGAATGCTGTCGTCACG 22076 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| ||| | ||||| || || || ||||| | | || ||| Sbjct 22077 GTTCCCGCCTACTTCAACGATGCCCAACGGCAAAGTACGAAAGACGCCGGTCAAATCGCG 22136 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || || ||| | | |||| || |||||||| ||||| | ||||| || || Sbjct 22137 GGCCTCAATGTTCTCCGCGTCGTCAACGAGCCAACAGCCGCTGCTCTGGCTTACGGCTTG 22196 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||| | |||||| || ||| ||||||||||||||||| ||| Sbjct 22197 GAGAAG------GCTGAAGATTCGGTCGTTGCTGTCTACGATCTCGGTGGTGGTACTTTT 22250 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 || |||| | ||| | ||| | ||| | ||||| || ||| | || ||| || Sbjct 22251 GACATCTCCATACTCGAGATTCAGAATGGCGTTTTCGAGGTCAAGTCCACCAATGGGGAC 22310 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| ||||||||||| || || || Sbjct 22311 ACTCACCTAGGTGGTGAGGACTTTGA 22336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657857646944160