Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq12 107 3e-18
>seq12
Length=470578
Score = 107 bits (118), Expect = 3e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| ||||| || | ||| || || || ||||| | ||||| ||| || ||| ||
Sbjct 223892 ATTTGCATACCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTG 223833
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| || || || ||| || || |||||||||||||| || || | ||||||
Sbjct 223832 TAGTCGGACAAGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGA 223773
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || || || || || || |||| || | || |||||| | ||
Sbjct 223772 TCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCAATAGTGTTAGAG 223713
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336
||||| || ||||| || || || || || ||
Sbjct 223712 GACTCTACCTCTAGGGTGATCGTCTTTCCAGT 223681
Score = 105 bits (116), Expect = 1e-17
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||||||||||||||| || | | |||||| || || || || ||||| ||
Sbjct 224268 ATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTT 224209
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||||||||||| | || | ||| ||| ||||| ||||| |||||||| | ||| ||
Sbjct 224208 GTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACTTCCAAAGTAAT 224149
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || | || || || |||||||||||
Sbjct 224148 CGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113
Score = 102 bits (112), Expect = 1e-16
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| ||||| || | ||| ||||| || || ||||| || | |||||| || ||
Sbjct 224120 ATTTGCATACCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTG 224061
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| ||||| | |||| ||| || | || || || ||||| || | | |||||||
Sbjct 224060 TAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGA 224001
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
||||| || || || || || || || ||||| | || | ||| || || |||||
Sbjct 224000 TCAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGAC 223941
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| | ||| || || || || |||| || || ||||| ||||||||
Sbjct 223940 GATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899647899996960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |