Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq12 107 3e-18 >seq12 Length=470578 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | ||| || || || ||||| | ||||| ||| || ||| || Sbjct 223892 ATTTGCATACCGCCGCGCAAGCGCAGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTG 223833 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || || ||| || || |||||||||||||| || || | |||||| Sbjct 223832 TAGTCGGACAAGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGA 223773 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || || || || |||| || | || |||||| | || Sbjct 223772 TCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCAATAGTGTTAGAG 223713 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 ||||| || ||||| || || || || || || Sbjct 223712 GACTCTACCTCTAGGGTGATCGTCTTTCCAGT 223681 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||||||||||||||| || | | |||||| || || || || ||||| || Sbjct 224268 ATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTT 224209 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||||||||| | || | ||| ||| ||||| ||||| |||||||| | ||| || Sbjct 224208 GTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACTTCCAAAGTAAT 224149 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || || ||||||||||| Sbjct 224148 CGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | ||| ||||| || || ||||| || | |||||| || || Sbjct 224120 ATTTGCATACCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTG 224061 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | |||| ||| || | || || || ||||| || | | ||||||| Sbjct 224060 TAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGA 224001 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || || || || ||||| | || | ||| || || ||||| Sbjct 224000 TCAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGTGTCGGAC 223941 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | ||| || || || || |||| || || ||||| |||||||| Sbjct 223940 GATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899647899996960