Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq69 203 4e-46 seq40 113 6e-19 seq35 111 2e-18 seq11 111 2e-18 seq43 104 3e-16 seq24 91.5 2e-12 seq20 91.5 2e-12 >seq69 Length=174959 Score = 203 bits (224), Expect = 4e-46 Identities = 341/492 (69%), Gaps = 15/492 (3%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| ||||||| ||||||||| || |||||||| | || ||||| Sbjct 173294 GCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTT 173353 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || ||||||||||| || | | | | ||||| || || | | ||| || | Sbjct 173354 CGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTGAG 173413 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||| |||||| ||| ||||| | |||||| |||||||||||||| ||||| Sbjct 173414 CCCGATGCCACCGGCCATCTTAGAGATCATGGCGCACGTCTTGAGCGTGTCGTAAATGCC 173473 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| ||| |||||||||| ||||| |||||||| || ||| || | ||| Sbjct 173474 CTCGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTGGCACTGAGGCGT 173533 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||| |||||||| |||| |||| ||| |||||| | || | |||||| || ||| Sbjct 173534 GCCAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTA 173593 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 || |||| || || | | || ||| || |||||| || | ||| Sbjct 173594 CGTTTCGAGGACTCGGTCGA---TATTGTC-------GC---CCCATA--TACCCACGGC 173638 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 |||||||||| ||||| ||||| ||||| |||| |||| | ||| ||| || Sbjct 173639 AACGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCAGATA 173698 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541 || || || ||| ||| |||||| || | || ||| || ||||| | | ||| Sbjct 173699 AGAACGCTCCAGAGTCTTGAAGCCAAAATACTGATAGTTAAAGTCCCGGTCATAGATGAT 173758 Query 1630542 GGCGGCGTCGAG 1630553 ||| | ||||| Sbjct 173759 GGCCGAATCGAG 173770 >seq40 Length=231345 Score = 113 bits (124), Expect = 6e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| || || |||||| | | || ||| ||||||||||| ||||||||||||||| Sbjct 6306 CCAACTATCTTGATATCAAGTCCTTACTTGATGTTGGGTGCAAGACTGTGGCCAACATGA 6247 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 6246 TCAAGGGAAAGTCTCCGGAGGAGATTCGGAAGACGTTCAACATCA 6202 >seq35 Length=250949 Score = 111 bits (122), Expect = 2e-18 Identities = 230/335 (69%), Gaps = 7/335 (2%) Strand=Plus/Minus Query 1726725 CCACGCTCCCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCT 1726784 ||| ||||||||| ||||||||||| ||||||| | | | ||| | || || | || Sbjct 65584 CCAGGCTCCCGTCCGTGCCGTTCTTAAAGCCGACCGGGAAGGACAGGCCGGAGGCGAGCT 65525 Query 1726785 CGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTG 1726844 |||| |||| ||| ||||||||| || || || | ||||| | | ||| | Sbjct 65524 CGCGATGCAGCTGAGACTCGGTCGTTCGGGCTCCAATAGCGCCGACGGAGATGCAGTCAG 65465 Query 1726845 CCAAATAAGG-GGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGG-C 1726902 |||| | | ||| | | | | ||| | |||| ||| | |||| || | || | Sbjct 65464 CCAAGAATTGAGGCGATATGGTGTC-GAGCATCTCGCTGGCAATGGGC--AT-GCCGCTC 65409 Query 1726903 GACGACGAGATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGA 1726962 || | ||| ||| |||| |||||| ||| || ||| ||| | | | || | || Sbjct 65408 GATGT-GAGGTCGACAAACATGCGGCGGGACACCCTCAAGCCCTTGTTGATCTGGAAGGA 65350 Query 1726963 CCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTC 1727022 | ||| | ||| || ||| || |||||||||||| || || |||||||||||||| || Sbjct 65349 CAGGTCCATGTCCGGATCGTTGATCAGGCCCTTCCAGCCAACTGTCGTGCGCGGCTTCTC 65290 Query 1727023 GACATAGGCGCGCATGACCACGCAAAGCGCGTCGC 1727057 || ||||||||||||||| | ||| || ||| || Sbjct 65289 GAGATAGGCGCGCATGACGATGCATAGATCGTTGC 65255 >seq11 Length=470063 Score = 111 bits (122), Expect = 2e-18 Identities = 184/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 512060 TTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGC 512119 ||||||||| | ||||||||| | || ||| ||||||| || ||| |||| || | Sbjct 340383 TTTGACGGCTCATACGTCAACCATCGGCACATTGCGCTACTGACGGACGTCATGACCTAC 340324 Query 512120 CGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTCCTG 512179 ||||| | | |||||| ||||| ||||| | ||||| |||||| ||| || Sbjct 340323 CGCGGTACCATCTCGGCCGTGACGCGGCACGGAATTAACCGGGCCGACACGGGCGCGCTC 340264 Query 512180 TCGCGGGCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAG 512239 ||| ||| ||||||||||| ||||| |||||| | || || |||||| || |||| Sbjct 340263 ATGCGCTGCTCATTCGAAGAGACGGTCGAGATCCTCCTCGAGGCTGCGGCCACTGGCGAG 340204 Query 512240 ACCGACAAGATCACCGACGGCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCC 512299 ||| ||| ||| ||| | | | || | |||| ||||| |||| ||||||| Sbjct 340203 CTGGAC--GATTGCCG-CGG---GATTTCGGAAAACGTCATGCTGGGACAGATGGCGCCC 340150 Query 512300 ATCGGCACGGCCATCTCGGACGT 512322 || || |||| || || ||||| Sbjct 340149 ATGGGGACGGGCAACTTCGACGT 340127 Score = 91.5 bits (100), Expect = 2e-12 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 509044 CCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCA 509103 ||| |||||||| |||||||| |||||||||| | || |||| | || | || Sbjct 342091 CCGAGGCTTTGTCGAGAACTCGTATCTCCGCGGCCTCACCCCGTCCGAGTTTTTCTTCCA 342032 Query 509104 CATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTA 509163 | || | || | ||||||||| ||||||| |||||||||||||| || ||||| || Sbjct 342031 CGCCATGGCTGGTAGAGAGGGCCTCATCGACACAGCCGTCAAGACGGCAGAAACGGGATA 341972 Query 509164 CATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGC-GCGGCGGCCTCG 509222 ||||||| | ||| ||||| || | || || | ||| | || || ||| | Sbjct 341971 CATCCAGAGGCGGCTTGTCAAGGCGCTCGA-AGACCTCAGTGCGCGCTACGACGGAACTG 341913 Query 509223 TGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCG 509264 |||| ||| | |||||||| |||||||| ||| |||| Sbjct 341912 TGCGGAACTCTTTGGGCGACATTGTCCAGTTCCTCTACGGCG 341871 >seq43 Length=225549 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| || ||||| || || || || ||||| |||| | ||| | |||||| Sbjct 90862 GACAGCACTGGTGGCACCGTCACTTGTGTCGTCCGCAATCTGCCTTCCGGCTTGGGCGAG 90921 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| ||||||||| || |||||||||||||| || || || ||| | Sbjct 90922 CCCTGCTTCGACAAGCTCGAGGCCGTCCTGGCCCACGCCATGCTATCTATTCCCGCCGTC 90981 Query 19167 AAGGGATTCGAGATTGG 19183 ||||| |||||| |||| Sbjct 90982 AAGGGTTTCGAGGTTGG 90998 >seq24 Length=328731 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||||||||||| |||||| | ||||| || ||||| Sbjct 174080 TAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTTTCCATG 174021 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | || || || | || | |||| ||||||| || || | |||| |||||| Sbjct 174020 AAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCAGTGCGACGAGAAGGCGG 173961 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||| || |||||||| ||||| ||| | | ||||||||||| | | || Sbjct 173960 TCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAATGCGCAG 173901 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 ||||| | ||| | | ||| |||| ||||| ||||||| ||| |||||| Sbjct 173900 GGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGAT 173848 Score = 87.8 bits (96), Expect = 2e-11 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| ||||||| || || || | ||||||| ||||| | ||| ||||||||||| Sbjct 173780 TGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAGGCATGAGGCCA 173721 Query 869234 CGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 |||||||||||||| ||||||| ||| | | | | | || ||||| |||||||| || Sbjct 173720 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTA-AAGAAGATACCCTCGACCGC 173662 Query 869293 GGCAAAG 869299 ||||||| Sbjct 173661 GGCAAAG 173655 >seq20 Length=364491 Score = 91.5 bits (100), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGCC 344241 |||||||| ||||||||||| || ||||| || || |||||||| ||| ||| ||| Sbjct 201075 GTGGCCTTTCCCACCGAGACGGTGTACGGGCTTGGGGCCGACGCGACGCGCAGCGATGCC 201134 Query 344242 GTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGTG 344301 ||||| ||| | | | |||||||| || || | |||||||| |||| ||||||||| Sbjct 201135 GTGCGCGCCATATATCACGTCAAGGGTCGGCCGACGGACAACCCGCTCATCGTGCACGTG 201194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107091766613226