Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq69 203 4e-46
seq40 113 6e-19
seq35 111 2e-18
seq11 111 2e-18
seq43 104 3e-16
seq24 91.5 2e-12
seq20 91.5 2e-12
>seq69
Length=174959
Score = 203 bits (224), Expect = 4e-46
Identities = 341/492 (69%), Gaps = 15/492 (3%)
Strand=Plus/Plus
Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121
|| ||||||||||||||| ||||||| ||||||||| || |||||||| | || |||||
Sbjct 173294 GCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTT 173353
Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181
|| ||||||||||| || | | | | ||||| || || | | ||| || |
Sbjct 173354 CGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTGAG 173413
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|||||||| |||||| ||| ||||| | |||||| |||||||||||||| |||||
Sbjct 173414 CCCGATGCCACCGGCCATCTTAGAGATCATGGCGCACGTCTTGAGCGTGTCGTAAATGCC 173473
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301
|||||| ||| |||||||||| ||||| |||||||| || ||| || | |||
Sbjct 173474 CTCGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTGGCACTGAGGCGT 173533
Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361
||| |||||||| |||| |||| ||| |||||| | || | |||||| || |||
Sbjct 173534 GCCAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTA 173593
Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421
|| |||| || || | | || ||| || |||||| || | |||
Sbjct 173594 CGTTTCGAGGACTCGGTCGA---TATTGTC-------GC---CCCATA--TACCCACGGC 173638
Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481
|||||||||| ||||| ||||| ||||| |||| |||| | ||| ||| ||
Sbjct 173639 AACGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCAGATA 173698
Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541
|| || || ||| ||| |||||| || | || ||| || ||||| | | |||
Sbjct 173699 AGAACGCTCCAGAGTCTTGAAGCCAAAATACTGATAGTTAAAGTCCCGGTCATAGATGAT 173758
Query 1630542 GGCGGCGTCGAG 1630553
||| | |||||
Sbjct 173759 GGCCGAATCGAG 173770
>seq40
Length=231345
Score = 113 bits (124), Expect = 6e-19
Identities = 88/105 (84%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||| || || |||||| | | || ||| ||||||||||| |||||||||||||||
Sbjct 6306 CCAACTATCTTGATATCAAGTCCTTACTTGATGTTGGGTGCAAGACTGTGGCCAACATGA 6247
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||| ||||| || |||||||| || ||||| || |||||||
Sbjct 6246 TCAAGGGAAAGTCTCCGGAGGAGATTCGGAAGACGTTCAACATCA 6202
>seq35
Length=250949
Score = 111 bits (122), Expect = 2e-18
Identities = 230/335 (69%), Gaps = 7/335 (2%)
Strand=Plus/Minus
Query 1726725 CCACGCTCCCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCT 1726784
||| ||||||||| ||||||||||| ||||||| | | | ||| | || || | ||
Sbjct 65584 CCAGGCTCCCGTCCGTGCCGTTCTTAAAGCCGACCGGGAAGGACAGGCCGGAGGCGAGCT 65525
Query 1726785 CGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTG 1726844
|||| |||| ||| ||||||||| || || || | ||||| | | ||| |
Sbjct 65524 CGCGATGCAGCTGAGACTCGGTCGTTCGGGCTCCAATAGCGCCGACGGAGATGCAGTCAG 65465
Query 1726845 CCAAATAAGG-GGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGG-C 1726902
|||| | | ||| | | | | ||| | |||| ||| | |||| || | || |
Sbjct 65464 CCAAGAATTGAGGCGATATGGTGTC-GAGCATCTCGCTGGCAATGGGC--AT-GCCGCTC 65409
Query 1726903 GACGACGAGATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGA 1726962
|| | ||| ||| |||| |||||| ||| || ||| ||| | | | || | ||
Sbjct 65408 GATGT-GAGGTCGACAAACATGCGGCGGGACACCCTCAAGCCCTTGTTGATCTGGAAGGA 65350
Query 1726963 CCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTC 1727022
| ||| | ||| || ||| || |||||||||||| || || |||||||||||||| ||
Sbjct 65349 CAGGTCCATGTCCGGATCGTTGATCAGGCCCTTCCAGCCAACTGTCGTGCGCGGCTTCTC 65290
Query 1727023 GACATAGGCGCGCATGACCACGCAAAGCGCGTCGC 1727057
|| ||||||||||||||| | ||| || ||| ||
Sbjct 65289 GAGATAGGCGCGCATGACGATGCATAGATCGTTGC 65255
>seq11
Length=470063
Score = 111 bits (122), Expect = 2e-18
Identities = 184/263 (70%), Gaps = 6/263 (2%)
Strand=Plus/Minus
Query 512060 TTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGC 512119
||||||||| | ||||||||| | || ||| ||||||| || ||| |||| || |
Sbjct 340383 TTTGACGGCTCATACGTCAACCATCGGCACATTGCGCTACTGACGGACGTCATGACCTAC 340324
Query 512120 CGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTCCTG 512179
||||| | | |||||| ||||| ||||| | ||||| |||||| ||| ||
Sbjct 340323 CGCGGTACCATCTCGGCCGTGACGCGGCACGGAATTAACCGGGCCGACACGGGCGCGCTC 340264
Query 512180 TCGCGGGCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAG 512239
||| ||| ||||||||||| ||||| |||||| | || || |||||| || ||||
Sbjct 340263 ATGCGCTGCTCATTCGAAGAGACGGTCGAGATCCTCCTCGAGGCTGCGGCCACTGGCGAG 340204
Query 512240 ACCGACAAGATCACCGACGGCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCC 512299
||| ||| ||| ||| | | | || | |||| ||||| |||| |||||||
Sbjct 340203 CTGGAC--GATTGCCG-CGG---GATTTCGGAAAACGTCATGCTGGGACAGATGGCGCCC 340150
Query 512300 ATCGGCACGGCCATCTCGGACGT 512322
|| || |||| || || |||||
Sbjct 340149 ATGGGGACGGGCAACTTCGACGT 340127
Score = 91.5 bits (100), Expect = 2e-12
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 509044 CCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCA 509103
||| |||||||| |||||||| |||||||||| | || |||| | || | ||
Sbjct 342091 CCGAGGCTTTGTCGAGAACTCGTATCTCCGCGGCCTCACCCCGTCCGAGTTTTTCTTCCA 342032
Query 509104 CATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTA 509163
| || | || | ||||||||| ||||||| |||||||||||||| || ||||| ||
Sbjct 342031 CGCCATGGCTGGTAGAGAGGGCCTCATCGACACAGCCGTCAAGACGGCAGAAACGGGATA 341972
Query 509164 CATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGC-GCGGCGGCCTCG 509222
||||||| | ||| ||||| || | || || | ||| | || || ||| |
Sbjct 341971 CATCCAGAGGCGGCTTGTCAAGGCGCTCGA-AGACCTCAGTGCGCGCTACGACGGAACTG 341913
Query 509223 TGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCG 509264
|||| ||| | |||||||| |||||||| ||| ||||
Sbjct 341912 TGCGGAACTCTTTGGGCGACATTGTCCAGTTCCTCTACGGCG 341871
>seq43
Length=225549
Score = 104 bits (114), Expect = 3e-16
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| || ||||| || || || || ||||| |||| | ||| | ||||||
Sbjct 90862 GACAGCACTGGTGGCACCGTCACTTGTGTCGTCCGCAATCTGCCTTCCGGCTTGGGCGAG 90921
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| ||||||||| || |||||||||||||| || || || ||| |
Sbjct 90922 CCCTGCTTCGACAAGCTCGAGGCCGTCCTGGCCCACGCCATGCTATCTATTCCCGCCGTC 90981
Query 19167 AAGGGATTCGAGATTGG 19183
||||| |||||| ||||
Sbjct 90982 AAGGGTTTCGAGGTTGG 90998
>seq24
Length=328731
Score = 91.5 bits (100), Expect = 2e-12
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759
|| || || || ||| |||||||||||||| |||||| | ||||| || |||||
Sbjct 174080 TAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTTTCCATG 174021
Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819
| || || || | || | |||| ||||||| || || | |||| ||||||
Sbjct 174020 AAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCAGTGCGACGAGAAGGCGG 173961
Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879
||||| || |||||||| ||||| ||| | | ||||||||||| | | ||
Sbjct 173960 TCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAATGCGCAG 173901
Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932
||||| | ||| | | ||| |||| ||||| ||||||| ||| ||||||
Sbjct 173900 GGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGAT 173848
Score = 87.8 bits (96), Expect = 2e-11
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| ||||||| || || || | ||||||| ||||| | ||| |||||||||||
Sbjct 173780 TGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAGGCATGAGGCCA 173721
Query 869234 CGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292
|||||||||||||| ||||||| ||| | | | | | || ||||| |||||||| ||
Sbjct 173720 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTA-AAGAAGATACCCTCGACCGC 173662
Query 869293 GGCAAAG 869299
|||||||
Sbjct 173661 GGCAAAG 173655
>seq20
Length=364491
Score = 91.5 bits (100), Expect = 2e-12
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGCC 344241
|||||||| ||||||||||| || ||||| || || |||||||| ||| ||| |||
Sbjct 201075 GTGGCCTTTCCCACCGAGACGGTGTACGGGCTTGGGGCCGACGCGACGCGCAGCGATGCC 201134
Query 344242 GTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGTG 344301
||||| ||| | | | |||||||| || || | |||||||| |||| |||||||||
Sbjct 201135 GTGCGCGCCATATATCACGTCAAGGGTCGGCCGACGGACAACCCGCTCATCGTGCACGTG 201194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107091766613226
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |