Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq69 158 1e-33 seq12 136 4e-27 seq70 95.1 1e-14 seq14 89.7 5e-13 >seq69 Length=174959 Score = 158 bits (174), Expect = 1e-33 Identities = 1049/1667 (63%), Gaps = 41/1667 (2%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCG-CGGTATTGTTGCA-ATATTTT 138415 |||||||| ||||||||||| || | | |||| ||| ||||| || || | Sbjct 172100 ATCTCCCAGACGGTCTTGTAAAGTGCTTTGAC--GTCGGCGGGGATGTTGGGGATGTTCT 172157 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 | ||| |||||| |||||||||| || || |||| | || | | ||| | Sbjct 172158 GTATGGACCCGTTTTCCGCAATGATTCGGTTCTTCATCGCGTCCGACCATAAGCCCAAGT 172217 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || || || || | ||| | ||| | ||||| || || || |||| ||| || | Sbjct 172218 CGACCAGATCCTTGAGCAGCCAGGGGTTGACCACCTGGAACTCGCCCGCCAGTACGCGTC 172277 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | ||| |||||| ||| ||||||| || | |||||||| || || || || | || Sbjct 172278 GCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATTTGCGACG 172337 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 || | || |||||||| ||||||| ||| || |||| || | |||||| Sbjct 172338 TGCTGGCCGTCGGCATAGGGGCCACCAGCAGACTGTTGCGTATGCCATACTCCTTGATCT 172397 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||| ||||| ||| ||||| | || ||| || ||||||||||| ||| Sbjct 172398 GCTCCCGGAGCGTTTCCCACTCCCAGAGCTCTGAAGGCTTCACCTTCCACATATCAAACT 172457 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAA-CTCTTGC 138774 | | || ||| || || |||| |||| ||| || ||||| Sbjct 172458 GGAGCACGCCCTCCGACGCAGGCGATCCTTTAAACGACGAGTAGGGCCCTTCGCTCTTT- 172516 Query 138775 GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTG 138834 |||| ||| | || | ||| | | ||| || || ||| || | ||| || Sbjct 172517 GCCAGCTCCATTGAGGCAGTCAACGCGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTT 172576 Query 138835 AGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGC 138894 ||| |||||||| | ||| ||||||||||||| | || || || ||||| Sbjct 172577 AGCTCCCGGGCCTCCGGAGACTCAAACGGCATGCGGAGAGCCAGAAAAGCATCAGCCAGG 172636 Query 138895 CCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTG-CGGCTTCGAT 138953 || || || || || || | || || ||||||| || | | ||| | | |||| | Sbjct 172637 CCCTGGACACCAACACCAATCGGTCGGTGGCGCATGTT-GCTGTTTTGGGCCTCTTCAAC 172695 Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013 || |||| ||| || |||||||| | || | || || ||||| |||| ||| | Sbjct 172696 TGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTACGGACGACGACCTGCGTCACCT- 172754 Query 139014 CTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC-GACAAATTTG 139071 | | | | | | || ||||| |||| || | |||||||| | | | || | Sbjct 172755 CGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGGTCATAGTCGACGAAGGCAGGCAGGGCT- 172813 Query 139072 TTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACA 139131 | |||||| | ||||| || || ||||| || || | ||| || || Sbjct 172814 ---------AGCGAGGCCAGATTGCAGACAGCAACTTCATCAGGTGCAGAGTACTCAACG 172864 Query 139132 ATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGG 139191 ||||| | || | || || | || || || | || | ||||||||| || ||| Sbjct 172865 ATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGG 172924 Query 139192 TTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 || ||| ||| ||||| ||||| |||| |||| |||||| ||| || | || Sbjct 172925 TTGCAATGATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATA 172984 Query 139252 AATTTGAACAAGTCCCTAGCTTGTA---TTTGACGCACGTAAAGTTCGTCGCGCTCGTAC 139308 | | ||| | | ||| | | | | || | | | | |||||||||||| Sbjct 172985 GAATACCACAGCTTCTGAGCCCGCACCGTCTTGCGGCC---ACGGCCCTCGCGCTCGTAC 173041 Query 139309 TTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCA 139368 |||||||| || | || ||| || |||||| ||| | ||| || |||| | || Sbjct 173042 TTTTCGTACAGAGCCTCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTG 173101 Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428 || |||||||||| ||| | ||||| || |||||| |||||||||| || |||||| Sbjct 173102 GGGCACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATC 173161 Query 139429 CACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTC-CGAACCCATGTTACGT-TTCA 139486 |||| || || | | ||||| || || | || | | ||||| | | | || Sbjct 173162 CACAGGGCTAAGAAGAGGTCGCGAGC--TCGAACCTCCTCCTTGCCATGGTTCTTGCGCA 173219 Query 139487 TGTTAAGGAAATCAAAAACGTCAGCGTGCCA-TGGTTCCAGATAGATGGCCATTGCGCCT 139545 | || || ||||| || ||||| ||||| ||| ||||| || ||||| | || ||| Sbjct 173220 AATCCAGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCT 173279 Query 139546 TTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATC 139602 ||| ||||| || || ||||||| || | | || || || || || | ||| Sbjct 173280 GGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATG 173339 Query 139603 GGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGAGCTCGGA 139660 || | |||| ||| || |||||||||| ||| ||| | | | ||| |||| Sbjct 173340 GGAATGACACCGTTCGAGGTCCCGTTGGTGC--CGGCAATGCAAGAGCCGGTAGCACGGA 173397 Query 139661 CGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGT 139719 ||| || |||| ||||| || ||| | | || || || | |||| || | Sbjct 173398 TCCGATGCACGTTGAGCCCGATGCCACCGGCCATCTTAGAGATCATGGCGCACGTCTTG- 173456 Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779 | || ||||| || || |||||||| |||| ||| || || ||||| || || Sbjct 173457 AGCGTGTCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGAC 173516 Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGT 139839 ||||| | |||||| || ||||| | || ||| || ||||| | | Sbjct 173517 AGTTGGCACTGAGGCGTGCCAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTG 173576 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899 | ||||| | | ||||||||||| | | | | |||| || ||||| || Sbjct 173577 CTGGACATGAGGTTGTACGTTTCGAGGACTCGGTCGATATTGTCGCCCCATATACCCACG 173636 Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGA 139959 | || ||||| | ||| |||||| || || | | | ||| |||| || |||| Sbjct 173637 GCAACGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCAGA 173696 Query 139960 TAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||| ||| || |||||| ||||||| ||| |||||| || || Sbjct 173697 TAAGAACGCTCCAGAGTCTTGAAGCCAAAATACTGATAGTTAAAGTC 173743 >seq12 Length=470578 Score = 136 bits (150), Expect = 4e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || ||||||||||||||||| |||||||||||||| ||| Sbjct 223741 AAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAACGCTTGATCTTTGCCGGAAAA 223800 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||| |||||||| || | | |||| || || |||||||| ||||| || |||||||| Sbjct 223801 CAGTTGGAGGATGGCAGGACCTTGTCCGACTACAACATTCAGAAGGAGTCTACACTACAT 223860 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || |||| |||||||| || Sbjct 223861 CTTGTCCTGCGCTTGCGCGGCGG 223883 >seq70 Length=137430 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || || || || || | | Sbjct 82752 GATGCAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCTTC 82811 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| || || || || ||||| || Sbjct 82812 TGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 82871 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||||||||| || ||||| || ||| ||| | || || ||||| Sbjct 82872 GCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGCGACTATAA 82931 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| || || ||| | || |||| ||||||| |||| Sbjct 82932 CATACAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTGCGCGGTGGCG 82981 >seq14 Length=772799 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777 || || ||||| || ||||| || || ||||| || || | | || || | || ||| Sbjct 70022 AAGACCCTAACGGGCAAAACCATCACCCTCGAGGTCGAGTCGTCGGAAACGATCGATAAC 69963 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 |||| | || ||| || || || || | || ||||| ||||||||||| ||||||| Sbjct 69962 TTTAAATCCAA-GATTCAGGATAAGGAGGTTATTCCTCCGGATCAACAACGACTGATCTT 69904 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||| || ||||| || ||| ||| | |||| ||||| ||||| ||||||| Sbjct 69903 CGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAAGG 69848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894349489840