Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq69 152 8e-31 seq23 114 2e-19 seq40 100 5e-15 seq11 100 5e-15 seq24 98.7 2e-14 seq20 93.3 7e-13 >seq69 Length=174959 Score = 152 bits (168), Expect = 8e-31 Identities = 342/511 (67%), Gaps = 21/511 (4%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| ||||||| ||||||||| || |||||||| | | ||||| Sbjct 173294 GCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTT 173353 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || ||||||||||| || | | | | ||| | || || | | ||| || | Sbjct 173354 CGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTGAG 173413 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||| |||||| ||| ||||| | |||||| | || ||||| ||||| ||||| Sbjct 173414 CCCGATGCCACCGGCCATCTTAGAGATCATGGCGCACGTCTTGAGCGTGTCGTAAATGCC 173473 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| ||| |||||||||| | || |||||||| || ||| | | ||| Sbjct 173474 CTCGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTGGCACTGAGGCGT 173533 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||| || ||||| |||| |||| ||| ||| | || ||||||| | ||| Sbjct 173534 GCCAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTA 173593 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 || |||| || || | | | || |||| |||||| || | ||| Sbjct 173594 CGTTTCGAGGACTCGGTCGA-----TATT----GTCG----CCCCATA--TACCCACGGC 173638 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAG 2073953 |||||||||||||||| ||||| ||||| |||| | ||||| | ||| ||| Sbjct 173639 AACGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCG---AGCTTCAGCAG 173695 Query 2073954 GTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCG 2074013 || || || ||| ||| | |||||| ||| ||| | ||| || || | | Sbjct 173696 ATAAGAACGCTCCAGAGTCTTGAAGCCAAAATACTGATAGTTAAAGTCCCGGTCATAGAT 173755 Query 2074014 GATGGCGGCGTCGAGGGCCTCCTTGTGCGCC 2074044 |||||| | ||||| |||||||||||| Sbjct 173756 GATGGCCGAATCGAGCCTATCCTTGTGCGCC 173786 Score = 107 bits (118), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 2071768 AGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAG 2071827 || || ||||| | |||||| ||| ||| ||| ||||| ||| ||||| | | Sbjct 173051 AGAGCCTCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATG 173110 Query 2071828 AGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCG 2071887 |||| ||| || ||| || ||||||| ||| ||||||||| |||||||| | Sbjct 173111 AGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCT 173170 Query 2071888 TAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAG 2071947 | ||||| ||||| || || |||||||||||| |||||||| || || || | Sbjct 173171 AAGAAGAGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAAAC 173230 Query 2071948 TCGACGAGGTCGGCGTGCCA-CGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCC 2072006 || | || || || ||||| ||||||||||| ||||||||| || |||||| Sbjct 173231 TCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTT 173290 Query 2072007 GCCGCC 2072012 |||||| Sbjct 173291 GCCGCC 173296 >seq23 Length=335438 Score = 114 bits (126), Expect = 2e-19 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 |||||||| ||| | |||||| | |||| || ||||||||||| || | || || | Sbjct 189742 CTGCCGCCTGGCAGACACAAGCTCGTCATTCTGGATGAGGCCGATAGCATGACCTCAGGC 189801 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 || ||||||||||||||| |||||||| | ||| | |||||||| | || || | Sbjct 189802 GCGCAGCAGGCCCTCCGACGCACCATGGAGATTTACTCAAACACGACAAGATTCGCCTTT 189861 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 |||||||| ||| | | |||||||| | |||||| || || |||||| | || Sbjct 189862 GCCTGCAATCAGTCCAACAAGATCATCGAACCACTCCAGTCTCGATGTGCCATCCTCCGA 189921 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434 | || |||||||| ||||| ||| | ||| || | | || || || || ||| Sbjct 189922 TACGCCAAGCTCACCGATACCCAGGTCGTCAAGCGGCTACTACAAATCATTGAGGCGGAA 189981 Query 2019435 AAGGTC 2019440 |||||| Sbjct 189982 AAGGTC 189987 >seq40 Length=231345 Score = 100 bits (110), Expect = 5e-15 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||| || || |||||| || | || ||| | ||||||||||| ||||||||| | | Sbjct 6306 CCAACTATCTTGATATCAAGTCCTTACTTGATGTTGGGTGCAAGACTGTGGCCAACATGA 6247 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 6246 TCAAGGGAAAGTCTCCGGAGGAGATTCGGAAGACGTTCAACATCA 6202 >seq11 Length=470063 Score = 100 bits (110), Expect = 5e-15 Identities = 182/265 (69%), Gaps = 10/265 (4%) Strand=Plus/Minus Query 434136 TTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGT 434195 ||||||||| | ||||||||| | || ||| ||||||| || ||| |||| || Sbjct 340383 TTTGACGGCTCATACGTCAACCATCGGCACATTGCGCTACTGACGGACGTCATGACCTAC 340324 Query 434196 CGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCGGGCCGACCACGGCTTTCTG 434255 ||||| | | |||||| ||||||||||| | |||||||||||| ||| || Sbjct 340323 CGCGGTACCATCTCGGCCGTGACGCGGCACGGAATTAACCGGGCCGACACGGGCGCGCTC 340264 Query 434256 TCGCGGGCCTCCTTTGAGGAGACTGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAG 434315 ||| ||| || || ||||| ||||| |||||| | || || |||||| || |||| Sbjct 340263 ATGCGCTGCTCATTCGAAGAGACGGTCGAGATCCTCCTCGAGGCTGCGGCCACTGGCGAG 340204 Query 434316 ACCGACAAGATCACCGACGGA--TCGGTCACCGAGCCCATCATTCTAGGCCAGGCGGCGC 434373 ||| ||| ||| ||| |||| | || |||| || || ||| ||||| Sbjct 340203 CTGGAC--GATTGCCGCGGGATTTCGGAAAACG------TCATGCTGGGACAGATGGCGC 340152 Query 434374 CCATCGGCACGGCCATCTCGGACGT 434398 |||| || |||| || || ||||| Sbjct 340151 CCATGGGGACGGGCAACTTCGACGT 340127 Score = 87.8 bits (96), Expect = 3e-11 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 431030 CCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCA 431089 ||| |||||||| |||||||| |||||||||| | || |||| | || | || Sbjct 342091 CCGAGGCTTTGTCGAGAACTCGTATCTCCGCGGCCTCACCCCGTCCGAGTTTTTCTTCCA 342032 Query 431090 CATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTA 431149 | || | || | ||||| ||| ||||||| |||||||||||||| || ||||| || Sbjct 342031 CGCCATGGCTGGTAGAGAGGGCCTCATCGACACAGCCGTCAAGACGGCAGAAACGGGATA 341972 Query 431150 CATCCAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCAGATCAAGC-GCGGCGGCCTCG 431208 ||||||| | ||| |||| || | || || | ||| | || || ||| | Sbjct 341971 CATCCAGAGGCGGCTTGTCAAGGCGCTCGA-AGACCTCAGTGCGCGCTACGACGGAACTG 341913 Query 431209 TGCGCAACGCCAACGGCGACATTGTCCAGTTTGCCTATGGCG 431250 |||| ||| | ||||||||||||||||| ||| |||| Sbjct 341912 TGCGGAACTCTTTGGGCGACATTGTCCAGTTCCTCTACGGCG 341871 Score = 87.8 bits (96), Expect = 3e-11 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 429518 CGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCC 429577 |||||||| ||||| |||||| || ||| || | || | ||||| || || Sbjct 343192 CGGGTGGAAAGTCGAACGCCACTTGATGGACGGTGATTATATTGTATTCAACCGCCAACC 343133 Query 429578 GTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCGGTCGCACCTT 429637 |||||| |||| || ||| ||| | || || |||||| | ||| || Sbjct 343132 GTCGCTTCACAAGGAGTCCATGATGGGACATTGCGTCCGCGTCATGCCTTATTCCACTTT 343073 Query 429638 CCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 429697 ||| |||||||| | || || |||||||||| || |||||||||||||||||||| Sbjct 343072 CCGTCTCAACCTCTCTGTCACCTCGCCCTACAACGCGGATTTTGACGGCGACGAGATGAA 343013 Query 429698 CCTGCACGTGCCCCAG 429713 | |||||||||||||| Sbjct 343012 CTTGCACGTGCCCCAG 342997 >seq24 Length=328731 Score = 98.7 bits (108), Expect = 2e-14 Identities = 174/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| ||| || || || ||| |||||||||||||| |||||| | | Sbjct 174097 TGACACCGGCCTTCTGATAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTA 174038 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 |||| || ||||| | || || || | || | ||| ||| ||| || | Sbjct 174037 GCGATATGTTTTCCATGAAATCAAAGGGATTTGACGACCTGTACATCTTTTCGTTGCCCA 173978 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||||| || ||||||||||| ||||| || || ||||| ||| | || ||||| Sbjct 173977 GTGCGACG--AGAAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTT 173920 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| | | || |||||| | ||| | | ||| |||| ||||| ||||||| Sbjct 173919 CATGCCAAGTAATGCGCAGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGC 173860 Query 794129 CTCGATGATGAT 794140 ||| ||||||| Sbjct 173859 ATCGGTGATGAT 173848 >seq20 Length=364491 Score = 93.3 bits (102), Expect = 7e-13 Identities = 97/122 (80%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCG-TCAGACGAGGC 2233149 || ||||||||||||||||| || || || || || ||||||||| || ||| ||| || Sbjct 201075 GTGGCCTTTCCCACCGAGACGGTGTACGGGCTTGGGGCCGACGCGACGCGCAG-CGATGC 201133 Query 2233150 CGTACAGCG-CATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACG 2233208 ||| | ||| ||| | | ||| |||||| || ||| | |||||||| |||||||||||| Sbjct 201134 CGTGC-GCGCCATATATCACGTCAAGGGTCGGCCGACGGACAACCCGCTCATCGTGCACG 201192 Query 2233209 TG 2233210 || Sbjct 201193 TG 201194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916184915503742