Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq24 138 1e-27
seq12 109 5e-19
>seq24
Length=328731
Score = 138 bits (152), Expect = 1e-27
Identities = 354/525 (67%), Gaps = 22/525 (4%)
Strand=Plus/Plus
Query 50211 AATA-TTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaa 50269
|||| |||| || | || ||||||| ||| ||||| | |||| | |||||||
Sbjct 173568 AATAGTTCCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAA 173627
Query 50270 aCTTA-CTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCG 50328
|| | | || || |||| || ||||| |||||| || || ||| | || ||| |
Sbjct 173628 -CTCATCGTTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTG 173686
Query 50329 GTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTT 50387
|| |||||| |||| || | | || || | | ||| | ||||| ||| | || |||
Sbjct 173687 GTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGT-GGCCTCATGCCTGGCTTGACCTTT 173745
Query 50388 AGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTAC 50447
|||||| | |||||||| || ||||| ||||||| |||||||| ||| | || |
Sbjct 173746 TCCAACGAACTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTC--CTGC 173803
Query 50448 AATACGCGCGTAAATGAAAAATTATCATACGAAACA----ATTTTGGACATGTTCAAAGA 50503
| | || | | ||||| | ||||| || | ||||| ||| ||
Sbjct 173804 ACT-----CGCACCTCAAAAACCGGGCCAGCAAACAGGTCATCTATGACATCATCACCGA 173858
Query 50504 AGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCAT 50563
||||||| ||||||| |||| ||| | || || || | ||| ||||| | |||||
Sbjct 173859 TGCCGTCGCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCAT 173918
Query 50564 GAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAG-ATTGTTGTTGCAGC 50622
|||||| | ||||| |||| || ||||| ||||| ||| | || | || ||| |
Sbjct 173919 GAACGCTACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-C 173977
Query 50623 TGGGACAACCGAAATACTATAATGCACGT--AACCCCTTTCCGTTTATGAATAACATATC 50680
|||| ||| ||||| | || | ||| || |||||| || ||| | ||||||||
Sbjct 173978 TGGG-CAA-CGAAAAGATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATC 174035
Query 50681 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50725
| | | ||||||||| ||||||||||||| || || || || ||
Sbjct 174036 GCTAGGGGGCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTA 174080
>seq12
Length=470578
Score = 109 bits (120), Expect = 5e-19
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 137220 TTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCAT 137278
|||||| || || ||||||||||||| || | || | ||||| |||||||| || |||
Sbjct 224304 TTCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCA-TCTTCCAGTTGTTTTCCGGCAA 224246
Query 137279 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCT 137338
| || || || || || ||||| || |||||||| ||||| ||||| || | |
Sbjct 224245 ATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACAT 224186
Query 137339 GTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTA 137398
|| | ||| || | | ||| ||||| | ||| | |||||| || ||||| || || |
Sbjct 224185 TGTCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGA 224126
Query 137399 CGAATATTTGCATA 137412
||||||||||||||
Sbjct 224125 CGAATATTTGCATA 224112
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
|| || ||||| || |||||||||||| || || | || || || || || |||
Sbjct 224081 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCA 224022
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| ||||||| || || ||||| || || || || || ||||| ||||| ||
Sbjct 224021 GCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTC 223962
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | || | ||||| | | ||| ||||| | ||| | ||||||||| || |||||
Sbjct 223961 ACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTC 223902
Query 137395 TTTACGAATATTTGCATA 137412
|| || || |||||||||
Sbjct 223901 TTCACAAAGATTTGCATA 223884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488540470269600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |