Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq24 138 1e-27 seq12 109 5e-19 >seq24 Length=328731 Score = 138 bits (152), Expect = 1e-27 Identities = 354/525 (67%), Gaps = 22/525 (4%) Strand=Plus/Plus Query 50211 AATA-TTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaa 50269 |||| |||| || | || ||||||| ||| ||||| | |||| | ||||||| Sbjct 173568 AATAGTTCCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAA 173627 Query 50270 aCTTA-CTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCG 50328 || | | || || |||| || ||||| |||||| || || ||| | || ||| | Sbjct 173628 -CTCATCGTTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTG 173686 Query 50329 GTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTT 50387 || |||||| |||| || | | || || | | ||| | ||||| ||| | || ||| Sbjct 173687 GTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGT-GGCCTCATGCCTGGCTTGACCTTT 173745 Query 50388 AGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTAC 50447 |||||| | |||||||| || ||||| ||||||| |||||||| ||| | || | Sbjct 173746 TCCAACGAACTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTC--CTGC 173803 Query 50448 AATACGCGCGTAAATGAAAAATTATCATACGAAACA----ATTTTGGACATGTTCAAAGA 50503 | | || | | ||||| | ||||| || | ||||| ||| || Sbjct 173804 ACT-----CGCACCTCAAAAACCGGGCCAGCAAACAGGTCATCTATGACATCATCACCGA 173858 Query 50504 AGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCAT 50563 ||||||| ||||||| |||| ||| | || || || | ||| ||||| | ||||| Sbjct 173859 TGCCGTCGCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCAT 173918 Query 50564 GAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAG-ATTGTTGTTGCAGC 50622 |||||| | ||||| |||| || ||||| ||||| ||| | || | || ||| | Sbjct 173919 GAACGCTACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-C 173977 Query 50623 TGGGACAACCGAAATACTATAATGCACGT--AACCCCTTTCCGTTTATGAATAACATATC 50680 |||| ||| ||||| | || | ||| || |||||| || ||| | |||||||| Sbjct 173978 TGGG-CAA-CGAAAAGATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATC 174035 Query 50681 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50725 | | | ||||||||| ||||||||||||| || || || || || Sbjct 174036 GCTAGGGGGCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTA 174080 >seq12 Length=470578 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 137220 TTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCAT 137278 |||||| || || ||||||||||||| || | || | ||||| |||||||| || ||| Sbjct 224304 TTCTTTCTGAATATTGTAATCGCTCAGAGTACGTCCA-TCTTCCAGTTGTTTTCCGGCAA 224246 Query 137279 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCT 137338 | || || || || || ||||| || |||||||| ||||| ||||| || | | Sbjct 224245 ATATGAGGCGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACAT 224186 Query 137339 GTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTA 137398 || | ||| || | | ||| ||||| | ||| | |||||| || ||||| || || | Sbjct 224185 TGTCAATCGTATCCGAAGATTCAACTTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGA 224126 Query 137399 CGAATATTTGCATA 137412 |||||||||||||| Sbjct 224125 CGAATATTTGCATA 224112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || |||||||||||| || || | || || || || || ||| Sbjct 224081 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCA 224022 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| || || ||||| || || || || || ||||| ||||| || Sbjct 224021 GCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTC 223962 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||| ||||| | ||| | ||||||||| || ||||| Sbjct 223961 ACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTC 223902 Query 137395 TTTACGAATATTTGCATA 137412 || || || ||||||||| Sbjct 223901 TTCACAAAGATTTGCATA 223884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488540470269600