Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq69 297 2e-75 seq24 127 2e-24 seq70 98.7 1e-15 >seq69 Length=174959 Score = 297 bits (328), Expect = 2e-75 Identities = 1141/1748 (65%), Gaps = 82/1748 (5%) Strand=Plus/Plus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA---GTCGCTT 148108 ||||||| |||||| || || || || ||||| || ||||| | | | |||||| Sbjct 172036 CGACTGGGACTGGTCGATAAAAGCACCCCGGTCGGCCGCCATCTGCACCACCTGTCGCTG 172095 Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 | ||||||||| | |||||||| || |||| | |||| ||| | ||| Sbjct 172096 ---CGAAATCTCCCAGACGGTCTTGTAAAGTGCTTTGACGTCGGCGGGGATGTTGGGGAT 172152 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | ||| | || ||| | ||||| || | || ||| |||||| ||| | Sbjct 172153 GTTCTGTATGGACCCGTTTTCCGCAATGATTCGGTTCTTCATCGCGTCCGACCATAAGCC 172212 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 | |||| ||| || | || ||| | | || |||||||| |||||||| || || || Sbjct 172213 CAAGTCGACCAGATCCTTGAGCAGCCAGGGGTTGACCACCTGGAACTCGCCCGCCAGTAC 172272 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 ||| ||| | || | |||| ||| | || || || ||||||||||||| | || || Sbjct 172273 GCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATTTG 172332 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 || || | ||||| ||||| || |||||||| |||||| | || | || Sbjct 172333 CGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCAGACTGTTGCGTATGCCATACTCCTT 172392 Query 148409 TATTTTGCGCTTCAGAGCCG--CCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATG 148466 || | || | | |||| |||| ||||||||| || || |||| |||||||| Sbjct 172393 GATCT-GCTCC-CGGAGCGTTTCCCACTCCCAGAGCTCTGAAGGCTTCACCTTCCACATA 172450 Query 148467 TCGTACTGCAGAATGCCGCGGCTA-GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTG 148525 || |||| || | ||| | | | || || || | |||| ||| || || | Sbjct 172451 TCAAACTGGAGCACGCC-CTCCGACGCAGGCGATCCTTTAAACGACGAGTAGGGCCCTT- 172508 Query 148526 CGC-CGCCGCCAGTTCGCAGCTCGCC--TCGAGCGCGCCGTAGTAAATCGTCTCGGCAAT 148582 ||| | ||||| || || | | || | |||| ||| ||| || |||||| || Sbjct 172509 CGCTCTTTGCCAGCTC-CATTGAGGCAGTCAA-CGCGGCGTGGTAGATGGTCTCGAATAT 172566 Query 148583 TTGCCTGTTGAGCAGC---GCCGCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAA 148638 || | ||| ||| | ||| ||| | | || ||||||| || || || || Sbjct 172567 TTTCTGGTTTAGCTCCCGGGCCTCCGGAGAC----TCAAACGGCATGCGGAGAGCCAGAA 172622 Query 148639 ACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGC 148698 | || || || |||||||| || || || ||||| || ||||| |||||| | Sbjct 172623 AAGCATCAGCCAGGCCCTGGACACCAACACCAATCGGTCGGTGGCGCATGTTGCTGTTTT 172682 Query 148699 GCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACC 148757 | || |||| | | || || |||||| |||||||||| | | || || || || || Sbjct 172683 GGGC-CTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTACGGACGACG 172741 Query 148758 ACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA------CTTGTCAT---CTACGATG 148808 |||| || | | | ||| | || ||||| || ||||| | |||| | Sbjct 172742 ACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGGTCATAGTCGACGAAG 172801 Query 148809 -CATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTA 148867 || || || ||| | ||||| |||||||| || || ||||| || || ||| Sbjct 172802 GCA--GG--CAGGGCTAGCGAGGCCAGATTGCAGACAGCAACTTCATCAGGTGCAGAGTA 172857 Query 148868 CTCTACGATCTCGGCGCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATT 148924 ||| ||||| || | ||| || || || | || | ||||| |||||||||||| Sbjct 172858 CTCAACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGT---GCCCAGGTTCTTTTGATT 172914 Query 148925 GCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGT 148984 |||||||| |||||| ||||||||||||||| |||| ||| |||||| ||| Sbjct 172915 GCTCTTGCGGTTGCAATGATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTAC 172974 Query 148985 TTCCACTAT-GAAC-CGATGCAGGTCCTGCGCGCGCAC----TTGCTGCTCGTAGCGACC 149038 ||||| || ||| | | ||| | ||| || ||||| |||| || || || Sbjct 172975 TTCCAGGATAGAATACCA--CAGCTTCTGAGCCCGCACCGTCTTGCGGCCA----CGGCC 173028 Query 149039 CTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGA 149096 ||| ||||||| | ||| | |||| || || | ||||||||||| ||| | ||| Sbjct 173029 CTCGCGCTCGTACTTTTCGTACAGAGCC--TCAAATTCATCGCCGTAGCAGTCGGCCAGA 173086 Query 149097 CCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATA 149156 ||||| || | || ||||||||||||| ||| | |||| | |||||||||||| Sbjct 173087 CCGGGACATTCGTTGGGGCACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATG 173146 Query 149157 AACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCC 149215 ||||| ||||| | ||| || || | | ||||||||| | || | | || || ||| Sbjct 173147 AACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGAG-CTCGAACCTCCTCCTTGCC 173205 Query 149216 CATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCA-CGGCTCAATGTACA 149274 ||| ||||| | || | || | || || ||||| ||||| | ||| | Sbjct 173206 ATGGTTCTTGCGCAAATCCAGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATA 173265 Query 149275 CCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAA 149331 || | || || ||| ||||||||||||||||||| ||| || ||||||||| Sbjct 173266 TGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAA 173325 Query 149332 ACACTCGAACCATAGGTTCAATGCCAC---TGGCAGTGCCGTTAGTAGAGCTAATGCGAC 149388 | || |||| ||| || |||| ||| | | || ||||| || | ||||| | Sbjct 173326 AGACACGAAGCATGGG---AATGACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAG 173382 Query 149389 TGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGG 149448 |||| || || | |||||||||| |||||||| ||| | ||| ||||| Sbjct 173383 AGCCGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCACCGGCCATCTTAGAGATCA 173442 Query 149449 CCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC 149507 ||||| ||| |||||| ||| ||||||||||||||||| |||||| |||| | Sbjct 173443 TGGCGCACGTC-TTGAGCGTGTCGTAAATGCCCTCGATGCTGTCATCCTTCAT-GTCAAC 173500 Query 149508 -AGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGC 149566 || ||||||||| ||| ||| | ||||||| || ||||| | || || Sbjct 173501 GAGGAAGCACGAGGACAGTTGGCACTGAGGCGTGCCAGCGTTGAACAGCGCCGGCGACGC 173560 Query 149567 GTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCAT 149625 || || || | || |||| ||| | | ||||| ||||| || ||||| || | | Sbjct 173561 ATGGGTGAAGAGCTTGCTGG-ACATGAGGTTGTACGTTTCGAGGACTCGGTCGATATTGT 173619 Query 149626 CGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGT 149685 |||| || || | ||| |||||||| | ||| || || || ||||| | | ||| Sbjct 173620 CGCCCCATATACCCACGGCAACGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGC 173679 Query 149686 TTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAA 149745 | | || |||| || || || |||||| ||||||| |||| |||| || Sbjct 173680 CGTCGAGCTTCAGCAGATAAGAACGCTCCAGAGTCTTGAAGCCAAAATACTGATAGTTAA 173739 Query 149746 AGTCGCGG 149753 |||| ||| Sbjct 173740 AGTCCCGG 173747 >seq24 Length=328731 Score = 127 bits (140), Expect = 2e-24 Identities = 342/520 (66%), Gaps = 25/520 (5%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 || || || || || || || |||||||| ||||||||| | | ||| ||||| | ||| Sbjct 174080 TAGTCACCAACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTTTCCATG 174021 Query 120415 AACTCGAACGGGTTGCTCG--CGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTC 120472 || || || || || || | || | ||||| | ||||| ||||| || | Sbjct 174020 AAATCAAAGGGATTTGACGACCTGTACATCTTTTCG--TTGCCCAGTGCGACGAGAAGGC 173963 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 |||| || || ||||| || |||| ||| | ||||||||||| || || || Sbjct 173962 GGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTAGCGTTCATGCCAAGTAATGCGC 173903 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 |||| || || | ||| || | || ||| | || || || ||| ||| | Sbjct 173902 AGGGCAGGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATGTC-- 173845 Query 120593 GCATAG------TGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGG---C 120643 |||| ||| | ||| | || || || | ||| ||| |||| | Sbjct 173844 --ATAGATGACCTGTTTGCTGGC--CCGGTTTTTGAGGTGCG------AGTGCAGGAGAC 173795 Query 120644 ACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGC 120703 | |||||||||||||||| || || || ||||| || || |||||| ||| |||| || Sbjct 173794 ATGCAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGC 173735 Query 120704 CGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACA 120763 | ||||||| ||| | |||||| |||| |||| ||||||| || |||||| | Sbjct 173734 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGA 173675 Query 120764 CGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGA 120823 ||||| || ||||||||| |||| ||| | || |||| | | ||| | || Sbjct 173674 TACCCTCGACCGCGGCAAAGGCCACCAAGCGTTGAGCAAACGATGAGTTTTTGTCCTGGA 173615 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||| || ||||| |||||||||||||| | ||| || Sbjct 173614 TCCAGCGTATAGCCCAGTCGGCCTTTTTGCGAATGCAAGG 173575 >seq70 Length=137430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| |||||||| || || |||| || || | | | || ||||||||||| || || Sbjct 82944 CTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCA-TCTTCGAGCTGCTTTCCGGCAA 82886 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| |||||||||||||| || ||||| |||||||| ||||| ||||| | Sbjct 82885 AGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGT 82826 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||| | | |||||| || | |||| || || || || || ||||| | Sbjct 82825 TGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGA 82766 Query 133648 CGAAAATCTGCAT 133660 | || |||||||| Sbjct 82765 CAAAGATCTGCAT 82753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417307284720