Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq12 105 4e-18 seq70 91.5 1e-13 >seq12 Length=470578 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | |||||| | || | || | ||| |||||| || |||||||||||||| Sbjct 224112 ACCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGA 224053 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || || ||||| |||| ||||| ||||| | || Sbjct 224052 CAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGG 223993 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| |||||| ||| |||| || | ||||||| ||||| | Sbjct 223992 AATACCCTCCTTGTCCTGGATTTTCGACTTC-ACATTATCGATGGTGTCGGACGATTCGA 223934 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||| || || ||||| || || |||||||| |||||| Sbjct 223933 CTTCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTGCATA 223884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | || | |||||| ||||| || || ||||||||| Sbjct 224339 CCACCACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTC 224280 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||| ||||||||||||||| || | ||||| || || | || Sbjct 224279 AGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGA 224220 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| ||| |||| ||| | || || ||||| || Sbjct 224219 ATGCCTTCCTTGTCTTGTATTTTCGACTTC-ACATTGTCAATCGTATCCGAAGATTCAAC 224161 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || ||||| || || || || || || || || || |||||| Sbjct 224160 TTCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCATA 224112 >seq70 Length=137430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||||||||| || |||||||| || ||| || || || | || || | || Sbjct 82955 TGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCTTCGAGCTGC 82896 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| || | |||||||| || | || | || || ||||| ||| || Sbjct 82895 TTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT- 82837 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | |||||| || ||||| |||| ||||| || || ||||| Sbjct 82836 GGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTCTTCCCTGT 82777 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| |||||||||||||| Sbjct 82776 GAGGGTTTTGACAAAGATCTGCAT 82753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701684485760