Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq70 105 2e-17 seq12 96.9 8e-15 >seq70 Length=137430 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| |||||||| || || |||||| | || ||||| ||||||| Sbjct 82756 CAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCTTCTGAC 82815 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| || ||| || Sbjct 82816 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 82875 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||||||| | |||||||| | || || ||| || ||| | Sbjct 82876 CGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGCGACTATAACATA 82935 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| ||||| ||||| || Sbjct 82936 CAGAAGGAGAGCACTCTGCACCTCGT 82961 >seq12 Length=470578 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || ||||| ||| || | || ||||| ||||| ||||||||||| ||| ||| || Sbjct 224116 CAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCGGAT 224175 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||| ||| || ||| || Sbjct 224176 ACGATTGACAATGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCCCCCGACCAACAG 224235 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || |||||||| || ||||||||||| | ||| || ||||||||| | Sbjct 224236 CGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACAATATT 224295 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||| | |||||||| || | ||||| Sbjct 224296 CAGAAAGAAAGCACTTTGCACCTTGTGCTGCGTCTTCG 224333 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || ||||||||||||||||| ||| || ||||| |||| || ||| Sbjct 223909 ACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCCGACACCATCGATAATGTGAAGTCG 223968 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || || || || || || ||| || || || | || ||||| || || ||| Sbjct 223969 AAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAACAGCGCCTGATCTTTGCTGGCAAG 224028 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | ||| || ||||||||||| ||||||||||||| || | ||| Sbjct 224029 CAGCTTGAGGATGGCCGAACTCTGTCCGATTACAACATCCAGAAAGAGTCCACGTTGCAC 224088 Query 206374 CTTGT 206378 ||||| Sbjct 224089 CTTGT 224093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181812047878338