Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq69 170 2e-37 seq24 105 6e-18 >seq69 Length=174959 Score = 170 bits (188), Expect = 2e-37 Identities = 732/1139 (64%), Gaps = 30/1139 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 |||||||| || |||||||||||||| || |||| | || | ||| ||| ||||| Sbjct 172244 TTGACCACCTGGAACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGC 172303 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | ||||| | |||| | || || ||||| |||||| Sbjct 172304 TCGAAGCACTCGTTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACC 172363 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || | || ||| | ||| | ||| | |||| ||| ||||| Sbjct 172364 AGCAGACTGTTGCGTATGCCATACTCCTTGATCTGCTCCCGGAGCGTTTCCCACTCCCAG 172423 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | | || ||| |||| |||||||| || |||||||||| || |||| || || Sbjct 172424 AGCTCTGAAGGCTTCACCTTCCACATATCAAACTGGAGCACGCCCTCCGAC--GCAGGCG 172481 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCC--TCGAG 147188 || |||| | |||| || |||| || |||| || || | | || | Sbjct 172482 ATCCTTTAAACGACGAGTAGGGCCCTTCGCTCTTTGCCAGCTC-CATTGAGGCAGTCAA- 172539 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 ||| | | ||| ||||| ||| |||| | |||||| | || || ||| Sbjct 172540 CGCGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTTAGCTCCCGGGCCTCCGGAGACTC 172599 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||||| || ||| || ||| ||||| |||| ||||||| ||| || || || || Sbjct 172600 AAACGGCATGCGGAGAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCAATCGG 172659 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAATAA 147367 ||| || ||||||| | || ||| | | || || |||||| || || | Sbjct 172660 TCGGTGGCGCATGTTGCTGTTTTGGGC-CTCTTCAACTGGGTAATGGTTGACGTCGATGA 172718 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425 || | ||||||||||| || || || | || | | ||| |||| ||| || || Sbjct 172719 TCCTATTGAGGTTACGGACGACGACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGC 172778 Query 147426 AGTCCCG-TCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483 || || | || | | | ||| | ||| || || ||| | || |||||||||||||| Sbjct 172779 AGCCCTGGTCATAGTCGACGAAGGCA--GG--CAGGGCTAGCGAGGCCAGATTGCAGACA 172834 Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 || || || | | ||||| |||||||| | ||| ||||| | ||| Sbjct 172835 GCAACTTCATCAGGTGCAGAGTACTCAACGATTTCCGTGCAAAGGTTCGAACTCCGAATG 172894 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 |||| || | |||||||| || || ||||| || ||| | |||||| |||| Sbjct 172895 GTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAATGATCCTTGTACAGCATGAACGGG 172954 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGC 147663 ||| || || || ||| | |||| | ||| | ||| || |||||| | Sbjct 172955 TTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACCACAGCTTCTGAGCCCGCACCGTC 173014 Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723 | || ||||||||| |||||| ||||||| |||||| || ||||||||| Sbjct 173015 TTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCGCCGTAG 173074 Query 147724 CAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTA 147783 || ||||| || |||||||| | | || ||||| |||| ||| ||| | Sbjct 173075 CAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCGTCCAATCACCGTTTTTCTCC 173134 Query 147784 ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAA 147843 ||||| ||| ||||| || || | |||||| || | | || ||||| ||| Sbjct 173135 ACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGAGCTCGAACC 173194 Query 147844 TCCTCGGCGCCCATG----TTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCA 147899 ||||| | ||||| ||||| ||||| || | | ||| || || ||||| Sbjct 173195 TCCTCCTTG-CCATGGTTCTTGCG---CAAATCCAGAAACTCAAAGACATCAGCATGCCA 173250 Query 147900 -GGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGC 147955 || || | ||| | ||| | |||||| ||| || |||||||||||||| | || Sbjct 173251 TTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGC 173310 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 | || |||||||||| || || | |||||| | ||| ||| || ||||||||| Sbjct 173311 GGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTCCCGTTGGTG 173369 >seq24 Length=328731 Score = 105 bits (116), Expect = 6e-18 Identities = 345/524 (66%), Gaps = 19/524 (4%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 || || ||| |||||||||||||| | ||||| || |||||| || | | | | | Sbjct 173572 GTTCCTTGCATTCGCAAAAAGGCCGACTGGGCTATACGCTGGATCCAGGACAAAAACTCA 173631 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || | ||| ||||||| || || ||||| || | || ||| || Sbjct 173632 TCGTTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCC 173691 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 |||||| |||| || | | || | ||| | ||||| ||| |||| || ||| Sbjct 173692 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAAC 173751 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 || | || ||||| || ||||| | |||||||||||||| |||||| || || Sbjct 173752 GAACTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTCCTGCACT---CG 173808 Query 46998 CGCGTGAATGA----GAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGG 47052 | | | || | | | |||| || || || ||| ||| | | || || | Sbjct 173809 CACCTCAAAAACCGGGCCAGCAAACA-GGTCA---TCTATGA-CATCATCACCGATGCCG 173863 Query 47053 TGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG 47112 | ||||||| | || ||| | || | || |||||| ||| || || |||||||||| Sbjct 173864 TCGCCATCGAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACG 173923 Query 47113 CACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGGA 47171 | | ||| | ||||| ||||| || || || || || | || ||| || || Sbjct 173924 CTACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCA-CTGGG- 173981 Query 47172 CAACCGAAATATTTTAATGCTCGT--AATCCGTTTGAGTTTATGAACAACATTTCGCTCG 47229 |||| ||| || | | | |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 173982 CAACGAAAAGATGTACAGG-TCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAG 174040 Query 47230 AGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG 47273 |||||||||||| |||||||| || || || || || ||| || Sbjct 174041 GGGGCAAAACCAACTTTTTCGAAAAGCGGGTTGGTGACTATCAG 174084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607756484080