Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq69 150 3e-30 seq24 111 2e-18 seq11 102 1e-15 >seq69 Length=174959 Score = 150 bits (166), Expect = 3e-30 Identities = 275/399 (69%), Gaps = 23/399 (6%) Strand=Plus/Minus Query 259791 TCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCG 259850 |||| ||||| ||||| | ||| ||||||| || ||| | || |||||| Sbjct 173673 TCGTTGAGCGCCCCCAACACATGATCATGCGCGTTGCCGTGGGTA--TATGGGG------ 173622 Query 259851 ACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTG 259909 ||||||| | || | || |||| || ||| | |||||| ||||| | | Sbjct 173621 ----CGACAATA---TCGACCGAGTCCTCGAAACGTACAACCTCATGTC-CAGCAAGCTC 173570 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCG 259966 |||||| ||| |||| |||| || || || |||||||| | ||| | | || Sbjct 173569 TTCACCCATGCGTCGCCGGCGCTGTTCAACGCTGGCACGCCTCAGTGCCAACTG---TCC 173513 Query 259967 TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026 |||||||| || | |||||||||| || ||||||||||| || |||||||||||| Sbjct 173512 TCGTGCTTCCTCGTTGACATGAAGGATGACAGCATCGAGGGCATTTACGACACGCTCAAG 173453 Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 |||||| | ||||| ||| |||||| |||||||| | || || | | || Sbjct 173452 ACGTGCGCCATGATCTCTAAGATGGCCGGTGGCATCGGGCTCAACGTGCATCGGATCCGT 173393 Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146 || | ||| | | | | || ||||||||||| || ||||| | | ||||||||| Sbjct 173392 GCTACCGGCTCTTGCATTGCCGGCACCAACGGGACCTCGAACGGTGTCATTCCCATGCTT 173333 Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || || |||||| ||||||| ||||||||||||||| || Sbjct 173332 CGTGTCTTTAACAACACGGCCCGCTACGTCGACCAGGGC 173294 >seq24 Length=328731 Score = 111 bits (122), Expect = 2e-18 Identities = 205/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| |||||||| |||||||| |||||||| | || | Sbjct 173172 GATTTGGCAAATGTAC-AAGAAGGCAGAGGCCTCATTTTGGACAGCCGAGGAAATAGATC 173230 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| ||| ||| || ||||| |||| | Sbjct 173231 TCTCCAAGGACTTGCATGACTGGAACAACCGCCTGAATGATGACGAAAAGTATTTTGTGT 173290 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| |||||||| ||||||| || |||||||| || ||| ||| | Sbjct 173291 CCCACATCCTGGCCTTTTT-CGCCGCCTCGGACGGCATCGTCAATGAAAACTTGGTTGAG 173349 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| |||| || ||||| || ||||| Sbjct 173350 CGGTTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATTATG 173409 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || || ||||| ||||||||||| ||||| ||||||| Sbjct 173410 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACCTATATCAAGGA 173465 >seq11 Length=470063 Score = 102 bits (112), Expect = 1e-15 Identities = 182/263 (69%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 1812944 ACGTCCGAGATGGCCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACC 1813003 ||||| || || |||| || ||||||||| ||| ||||| |||| | |||| | | Sbjct 340127 ACGTCGAAGTTGCCCGTCCCCATGGGCGCCATCTGTCCCAGCATGACGTTTTCCGAAATC 340186 Query 1813004 GAGCCGTCGGTGATCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACA 1813063 ||| ||| ||| ||| |||| || |||||| || || | |||||| ||||| Sbjct 340187 ---CCG-CGGCAATC--GTCCAGCTCGCCAGTGGCCGCAGCCTCGAGGAGGATCTCGACC 340240 Query 1813064 GTCTCCTCAAAAGAGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGC 1813123 ||||| || || ||| |||| || || |||||| ||||||| ||||||||| Sbjct 340241 GTCTCTTCGAATGAGCAGCGCATGAGCGCGCCCGTGTCGGCCCGGTTAATTCCGTGCCGC 340300 Query 1813124 GTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGG 1813183 || |||||| | | |||||| | |||| ||| || ||||||| ||| || Sbjct 340301 GTCACGGCCGAGATGGTACCGCGGTAGGTCATGACGTCCGTCAGTAGCGCAATGTGCCGA 340360 Query 1813184 TCGTTGACATAGGTGCCGTCAAA 1813206 | |||||| || | ||||||||| Sbjct 340361 TGGTTGACGTATGAGCCGTCAAA 340383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177755450837636