Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq69 150 3e-30
seq24 111 2e-18
seq11 102 1e-15
>seq69
Length=174959
Score = 150 bits (166), Expect = 3e-30
Identities = 275/399 (69%), Gaps = 23/399 (6%)
Strand=Plus/Minus
Query 259791 TCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCG 259850
|||| ||||| ||||| | ||| ||||||| || ||| | || ||||||
Sbjct 173673 TCGTTGAGCGCCCCCAACACATGATCATGCGCGTTGCCGTGGGTA--TATGGGG------ 173622
Query 259851 ACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTG 259909
||||||| | || | || |||| || ||| | |||||| ||||| | |
Sbjct 173621 ----CGACAATA---TCGACCGAGTCCTCGAAACGTACAACCTCATGTC-CAGCAAGCTC 173570
Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCG 259966
|||||| ||| |||| |||| || || || |||||||| | ||| | | ||
Sbjct 173569 TTCACCCATGCGTCGCCGGCGCTGTTCAACGCTGGCACGCCTCAGTGCCAACTG---TCC 173513
Query 259967 TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026
|||||||| || | |||||||||| || ||||||||||| || ||||||||||||
Sbjct 173512 TCGTGCTTCCTCGTTGACATGAAGGATGACAGCATCGAGGGCATTTACGACACGCTCAAG 173453
Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086
|||||| | ||||| ||| |||||| |||||||| | || || | | ||
Sbjct 173452 ACGTGCGCCATGATCTCTAAGATGGCCGGTGGCATCGGGCTCAACGTGCATCGGATCCGT 173393
Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146
|| | ||| | | | | || ||||||||||| || ||||| | | |||||||||
Sbjct 173392 GCTACCGGCTCTTGCATTGCCGGCACCAACGGGACCTCGAACGGTGTCATTCCCATGCTT 173333
Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185
|| || |||||| ||||||| ||||||||||||||| ||
Sbjct 173332 CGTGTCTTTAACAACACGGCCCGCTACGTCGACCAGGGC 173294
>seq24
Length=328731
Score = 111 bits (122), Expect = 2e-18
Identities = 205/296 (69%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| |||||||| |||||||| |||||||| | || |
Sbjct 173172 GATTTGGCAAATGTAC-AAGAAGGCAGAGGCCTCATTTTGGACAGCCGAGGAAATAGATC 173230
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
|| | ||| | ||||| ||| ||| || ||||| |||| |
Sbjct 173231 TCTCCAAGGACTTGCATGACTGGAACAACCGCCTGAATGATGACGAAAAGTATTTTGTGT 173290
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||| |||||||| ||||||| || |||||||| || ||| ||| |
Sbjct 173291 CCCACATCCTGGCCTTTTT-CGCCGCCTCGGACGGCATCGTCAATGAAAACTTGGTTGAG 173349
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
|| || | ||||| || | || ||||| |||| || ||||| || |||||
Sbjct 173350 CGGTTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATTATG 173409
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || ||||||||||| || || ||||| ||||||||||| ||||| |||||||
Sbjct 173410 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACCTATATCAAGGA 173465
>seq11
Length=470063
Score = 102 bits (112), Expect = 1e-15
Identities = 182/263 (69%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 1812944 ACGTCCGAGATGGCCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACC 1813003
||||| || || |||| || ||||||||| ||| ||||| |||| | |||| | |
Sbjct 340127 ACGTCGAAGTTGCCCGTCCCCATGGGCGCCATCTGTCCCAGCATGACGTTTTCCGAAATC 340186
Query 1813004 GAGCCGTCGGTGATCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACA 1813063
||| ||| ||| ||| |||| || |||||| || || | |||||| |||||
Sbjct 340187 ---CCG-CGGCAATC--GTCCAGCTCGCCAGTGGCCGCAGCCTCGAGGAGGATCTCGACC 340240
Query 1813064 GTCTCCTCAAAAGAGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGC 1813123
||||| || || ||| |||| || || |||||| ||||||| |||||||||
Sbjct 340241 GTCTCTTCGAATGAGCAGCGCATGAGCGCGCCCGTGTCGGCCCGGTTAATTCCGTGCCGC 340300
Query 1813124 GTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGG 1813183
|| |||||| | | |||||| | |||| ||| || ||||||| ||| ||
Sbjct 340301 GTCACGGCCGAGATGGTACCGCGGTAGGTCATGACGTCCGTCAGTAGCGCAATGTGCCGA 340360
Query 1813184 TCGTTGACATAGGTGCCGTCAAA 1813206
| |||||| || | |||||||||
Sbjct 340361 TGGTTGACGTATGAGCCGTCAAA 340383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177755450837636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |